Populus alba (white poplar): 118050287
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Entry
118050287 CDS
T07314
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03013
Nucleocytoplasmic transport
palz03015
mRNA surveillance pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118050287
09122 Translation
03013 Nucleocytoplasmic transport
118050287
03015 mRNA surveillance pathway
118050287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118050287
03041 Spliceosome [BR:
palz03041
]
118050287
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118050287
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118050287
Spliceosome [BR:
palz03041
]
Complex C
Other components
EJC/TREX
118050287
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118050287
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
YihI
Motif
Other DBs
NCBI-GeneID:
118050287
NCBI-ProteinID:
XP_034916488
LinkDB
All DBs
Position
6:complement(22691677..22697328)
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AA seq
428 aa
AA seq
DB search
MGETRDNDTYEEELLDYEEEDEKAPDSVGAKVNGEAVKKGYVGIHSSGFRDFLLKPELLR
SIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTSGQVIALV
LCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNIKTHKDLLKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaagagacaacgacacttacgaggaggagcttctagattatgaagaagaa
gacgagaaagcacctgactccgtcggcgctaaagttaacggcgaagccgttaagaaagga
tatgttgggattcacagttcgggattcagagatttccttttgaagccagagcttcttcgg
tctattgtcgactcgggttttgagcatccttctgaagtgcaacatgaatgtatccctcaa
gccatcttggggatggatgtcatctgccaagctaaatctggaatgggaaagactgctgtt
tttgttctttctactcttcagcaaattgagccgacctctggacaagttattgcccttgtt
ctatgtcacactagagagttggcttaccagatctgccacgagtttgagaggttcagtact
tacttgcctgacaccaaggttgctgttttctatggtggtgtcaatatcaaaactcacaag
gatctactgaaaaatgaatgccctcatattgttgttggaacacctggaagaatcctggca
cttgctagagataaggacctttctttgaagaacgtcagacattttatccttgatgaatgt
gacaaaatgcttgaatcactcgacatgaggagagatgttcaggagattttcaagatgact
cctcatgataagcaggttatgatgttttctgcaacgctcagcaaagaaatccgcccagtt
tgcaagaaatttatgcaagatccgatggaaatttacgttgatgatgaagccaagttgacc
ctccatggtcttgtgcagcactacatcaaactgactgagctggagaaaaacagaaagtta
aatgatcttcttgatgcactggacttcaatcaagttgttatctttgttaaaagtgtgagc
agagcagctgagctgaacaagttactcgtggagtgtaatttcccctccatttgcatacat
tctggcatgtcacaggaagaaaggttgatgcgctacaagggtttcaaggagggtcataaa
aggattcttgttgccactgacttggttggcaggggtattgatattgaacgtgtcaacatt
gtcattaactatgacatgccagactcagctgacacttacttgcacagggttggtagagct
ggtaggtttggcacaaaaggccttgcaattacctttgtatcatcagcttcggattctgat
gttctcaaccaggttcaagagaggtttgaggtggatataaaggagcttcctgagcaaatt
gatacatctacatatatgccatcttaa
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