Populus alba (white poplar): 118050608
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Entry
118050608 CDS
T07314
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
palz
Populus alba (white poplar)
Pathway
palz03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
118050608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palz03021
]
118050608
03019 Messenger RNA biogenesis [BR:
palz03019
]
118050608
Transcription machinery [BR:
palz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
118050608
RNA polymerase I system
118050608
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
118050608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW4_SPT5
Spt5-NGN
KOW
KOW6_SPT51-2
KOW2_Spt5
KOW7_SPT5
KOW5_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
DUF4438
ProQ_C
KOW6_SPT5
Motif
Other DBs
NCBI-GeneID:
118050608
NCBI-ProteinID:
XP_034916878
LinkDB
All DBs
Position
4:17458398..17466088
Genome browser
AA seq
1048 aa
AA seq
DB search
MSRRRDEDDDLEDEEYEEQEEQVMDEEEEEYYEGEEEEAIRKRRRSDFFDDIAEEEEEEE
DDDDEDEDYGGGGGGGGGGGGRKQKGKKRRGSEFFDDIAQVASDDEEDEDDGEDDFIVDD
HGADLPDEGSGRRMHRRPLLPAEEDQEDVEALERSIQARYAKSMHSEYDEETTEVEQQAL
LPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSAIALDHLKNYIYIEADKEA
HVREACKGLRNIFGQKIMLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGNYKGDLAKVVD
VDNVRQRVTVKLIPRIDLQALANKLEGREAPKKKAFVPPPRFMNVEEARELHIRVERRRD
PMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIKPSFDELEKFRTPGENGDGDIASLST
LFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNEKELCK
YFEPGNHVKVVSGTHEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGATN
IGGYELHDLVLLDNMSFGLIIRVESEAFQVLKGVPERPDVALVRLREIKCKIEKKTNVQD
RYKNTVSVKDVVRIIDGPCKGKQGPVEHIYRGVLFIYDRHHLEHAGFICAKSHSCVVVGG
SRSNGDRNGDSYSRLSSFKTPPRVAPSPKRFSRGGPPFESGGRNRGGRGGHDALVGTTIK
VRQGPFKGYRGRVVDIKGQLVRVELESQMKVVTVDRSHISDNVVVSTPYRDTPRYGMGSE
TPMHPSRTPLRPYMTPMRDAGATPIHDGMRTPMRDRAWNPYAPMSPPRDNWEDGNPGSWG
TSPQYQPGSPPSGTYEAPTPGSGWASTPGGNYSEAGTPRDSSSAYANAPSPYLPSTPGGQ
PMTPGSASYLPGTPGGQLMTPGTNGLDMMSPVIGGDGEGPWFIPDILVNVHRTTDEPTVG
VIREVLQDGSCKIALGVNGNGETITALPSEIEIVVPRKSDKIKILGGAHRGVTGKLIGVD
GTDGIVKLEDTLDVKILDMVILAKLAQM
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgtcgaagagacgaagacgacgaccttgaagatgaagagtatgaggagcaggaa
gagcaagtaatggatgaagaagaggaggaatattatgagggtgaagaagaggaagcgatt
aggaagagacggagatcagatttctttgatgatattgcggaggaggaggaggaggaggag
gacgatgatgatgaggatgaggattatggtggcggtggtggtggaggaggaggtggtggt
ggtaggaagcagaaggggaagaagcggcgtggctcagagttttttgatgatattgctcaa
gttgccagtgatgacgaggaggatgaagatgatggcgaggacgattttatagttgacgat
cacggagctgatttacctgatgagggtagtggtagaaggatgcatcgtaggccgttactg
cctgcagaagaggatcaagaagatgttgaagcacttgagagaagtattcaagcaagatat
gcaaagtcaatgcactcagaatatgatgaagagactacggaagtggagcaacaagctctt
ttgccatctgttcgggatccgaaattatggatggttaagtgtgcgattggccgtgaacgg
gagacggctgtttgtttaatgcaaaaatacattgataaaggatcggagttgcaaattcgg
tctgctattgctcttgatcatcttaaaaactatatatatattgaagcagacaaagaagcc
catgtgagagaggcttgtaaaggcttgcgcaatatttttgggcagaaaatcatgcttgtt
ccaatcaaagaaatgactgatgttctttcagttgaaagcaaagcaattgatctttcaagg
gacacctgggtcagaatgaagattgggaattacaaaggggaccttgctaaagttgtagat
gtagataatgtccggcagagagttacagtaaagttaattccaaggattgacttgcaggct
cttgcaaacaaactggaaggcagagaagcgccaaaaaagaaggcatttgtacctcctcca
cgttttatgaatgttgaagaagctagggaattacatattcgtgtagaacgcagaagagat
ccaatgaccggtgattattttgaaaatattggcgggatgctttttaaagatggtttcttg
tataaaactgtatcaatgaagtcaattagtgctcagaacattaagccatcatttgatgag
cttgagaagtttcgtacacctggagagaatggagatggtgatattgccagtttgtcaacc
ttgtttgcaaacagaaagaagggccattttatgaagggtgatgcagttattgttgtcaag
ggtgatctgaaaaatctaaagggatgggttgagaaagttgatgaagaaaatgtacatatt
agacctgaaatgaagggtcttccgaaaacacttgcagtaaatgaaaaggaattgtgcaag
tattttgaacccggcaatcacgtgaaggttgtctcaggcacacatgaaggtgcaactggc
atggttgttaaggttgagcagcatgtgctcattattctgtctgatacaacaaaggaacat
atccgtgtatttgctgatgatgttgtggaaagttctgaggtaactacaggagctaccaac
attgggggctatgagcttcacgatcttgtgctattggataatatgagctttggtttaatt
attcgtgtagaaagtgaagcctttcaggttctcaagggagttccagagagacctgatgtt
gcacttgttagactgagagagatcaaatgcaaaattgagaagaaaaccaatgtccaagat
cggtacaagaacactgtatctgtgaaagatgttgttaggatcattgatggtccttgcaaa
ggaaaacaaggtcctgtagaacacatatatagaggagttctgttcatctatgatcggcat
caccttgagcatgctgggtttatttgtgctaaatcccattcctgtgtggttgtcggtgga
tcacgctccaatggagatagaaatggtgattcctattcaagattgagcagttttaaaact
cctccccgagtagccccgtcaccaaagagattttctagaggaggtcctccatttgagtct
ggaggaagaaatagaggtggacggggagggcatgatgctttggttggtaccacaataaag
gtacgacagggtcctttcaagggttaccgtgggcgtgttgtagatatcaaaggtcaactt
gttagagttgaactggaatcgcaaatgaaagttgttactgttgatcggagccacatctca
gataatgtggttgtttcaactccataccgcgatacacctcgatatggtatgggaagtgaa
accccaatgcatccttctcggactccattgcgtccatacatgacaccaatgagagatgct
ggagcgacacctattcatgatggcatgaggacacctatgcgtgatcgggcctggaatcct
tatgcaccaatgagtcctccaagggataattgggaagatgggaatcctgggtcttgggga
accagtccacagtatcagccaggaagccctccctctggaacatatgaagctccaactcct
ggttcaggctgggctagcactcctggtggtaattatagtgaagctggaacaccaagagat
agcagttctgcctatgccaatgctccaagcccatacctgccatcaactcctggcggccag
cctatgacacctggctcagcatcctacctccctggcactcctggagggcaactaatgaca
cctggaactaatggtcttgatatgatgtctcctgttataggtggagatggtgaaggacca
tggttcatacccgacatattggtgaacgtacacaggaccacagatgaaccgactgttggt
gtcatcagggaggtgcttcaggatggctcttgtaaaatagccctgggggtgaatggcaac
ggcgagacaataactgcacttcctagtgaaattgagatagtagtgcctaggaaatcagac
aagatcaagatcttgggtggtgcacatcgtggtgttactggcaagttaattggtgtggat
ggcactgatggaattgtaaagttggaggacactcttgatgttaagatattagacatggtc
atactagctaaacttgcacaaatgtga
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