Populus alba (white poplar): 118051106
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Entry
118051106 CDS
T07314
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X2
KO
K14962
COMPASS component SWD2
Organism
palz
Populus alba (white poplar)
Pathway
palz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118051106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118051106
03036 Chromosome and associated proteins [BR:
palz03036
]
118051106
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
118051106
Chromosome and associated proteins [BR:
palz03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
118051106
COMPASS/SET1 complex (yeast)
118051106
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
WDR55
WD40_Gbeta
ANAPC4_WD40
Beta-prop_WDR3_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_Aladin
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_SPT8
Beta-prop_ACSF4
Beta-prop_NUP159_NUP214
WD40_RFWD3
WD40_MABP1-WDR62_1st
TRM82_WD
NBCH_WD40
PAC11
Beta-prop_VPS8
Beta-prop_SCAP
WD_LRWD1
Tricorn_2nd
PD40
YonK
Motif
Other DBs
NCBI-GeneID:
118051106
NCBI-ProteinID:
XP_034917549
LinkDB
All DBs
Position
16:complement(4120716..4124277)
Genome browser
AA seq
342 aa
AA seq
DB search
MAMTSLTELDDDTVRSMSIGAVFSEFGGKINSIDFHRKDDLLVTASEDDSVRLYDIASAK
LLKTTFHKKHGADRICFTHHPSSVICSSTYNLDSTGESLRYLSMYDNRCLRYFKGHKERV
VSLCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAYDQQGLVFAVAMEGGA
IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTSNNIYVLDAYGGEKRCG
FSLEPSPNTKIEATFTPDGQYVVSGSGDGTLHAWNINMRNEVSCWNSHIGISSCLKWAPR
RAMFAAASTVLTFWIPDSSKSTVEPRPMDVEGAAPSENVSQQ
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggctatgacgtcgcttacagaactcgatgatgatacggtgcgcagcatgtctattgga
gctgttttctccgaatttggggggaagattaattcaattgattttcatcgaaaagacgat
ttgttagttacagctagcgaggatgattcggttcgcctttacgacattgcaagtgccaaa
ttgctgaagactacgtttcacaagaaacacggtgcagatcgaatatgtttcacgcaccac
cctagctctgttatttgttcctcaacatacaatttagattctaccggagaatcattacgt
tatctatcaatgtatgataatcgatgtcttcgctacttcaaagggcataaagagagggtt
gtttccctctgcatgtctccaatcaatgatagcttcatgtctggttctcttgatcacagc
gttagaatatgggatcttcgtgtaaatgcctgccagggaattttgcgtttacgtggtaga
cccacagttgcatatgaccaacaaggtcttgtctttgctgtggcaatggaagggggtgct
attaagctgtttgattcacgttcttatgacaagggtccctttgacacgtttttagttggt
ggagatacagctgaggtttgtgatattaaattcagcaacgatggcaaatcaatgctattg
acgaccacaagtaacaacatctatgttctcgatgcatatggtggagagaagcgatgtggg
ttcagtttggaaccatctccaaatacaaaaatagaggcaacttttaccccagatggccaa
tatgtggtatcaggctcaggagatggaaccttgcatgcctggaacatcaacatgcgaaat
gaggtatcatgctggaacagtcacataggtatctcatcatgcttgaaatgggctcctcgt
cgtgccatgtttgctgctgcatctactgttctcacgttttggatacctgacagctcaaaa
tccactgtcgaacctcgtcccatggacgttgaaggcgcagctccatctgaaaatgtatct
caacaatga
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