Populus alba (white poplar): 118051114
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Entry
118051114 CDS
T07314
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
palz
Populus alba (white poplar)
Pathway
palz03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118051114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palz03021
]
118051114
03036 Chromosome and associated proteins [BR:
palz03036
]
118051114
Transcription machinery [BR:
palz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
118051114
Coactivators
SAGA/TFTC/STAGA complex
118051114
Chromosome and associated proteins [BR:
palz03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
118051114
STAGA complex
118051114
TFTC complex
118051114
SAGA complex
118051114
SLIK complex
118051114
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SCAP
Ge1_WD40
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Cytochrom_D1
WD40_like
WD_LRWD1
RAB3GAP2_N
PROPPIN
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
118051114
NCBI-ProteinID:
XP_034917557
LinkDB
All DBs
Position
18:1679350..1685570
Genome browser
AA seq
678 aa
AA seq
DB search
MDEEAVVKFVETYLKKKGFKQAELAFHEEIQHQQQQQNNSNNAISIHSDPDLSSLLHSLS
QPEDSPARYQDEYSKLRSWAYSSLDLYKHELLRVLYPVFVHCYMDIVAKGHIQEARNFFN
SFREDHEMMHSRDLQKLEGVLSPSHLEEMEFAHTLRQSKVNIKICQYSNELLMQYLRKSK
CTIILGIVNEHINFQVSPGQPISISDDPDAVTLIGSSQDAANQINKKEIRWGLLEDSIEE
RLEKTGGFLSDSEKTEGETKEGDMDENKKRSIDGGKQGASIKKSKKDKAASATTKIARPE
ANTVSAAPRVKPELPLPVISFRPAEVEQSILEDLRNRVQLSSVTLPSVSFYTFINTHNGL
NCSSISHDGSLVAGGFSDSSLKVWDMAKLGHQAGNSILQGENDAAPSEQGQSTNSGKRSY
TLFQGHSGPVHSATFSPLGDFILSSSADTTVRLWSTKLNANLVCYKGHNYPVWDVQFSPV
GQYFASASHDRTARIWSMDRIQPLRIMAGHLSDVDCLQWHANCNYIATGSSDKTVRLWDV
QSGECVRIFIGHRSMILSLAMSPDGRYMASADEDGTIMMWDLSSGRCISPLIGHNSCVWS
LAFSCEGSLLASGSADCTVKLWDVTTSTKAPRTEESKSGNTNRLRLLKTLPTKSTPVYTL
RFSRRNLLFAAGALAKSQ
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaagcagtagtgaagtttgtggagacatatttaaagaagaaagggttcaag
caagcagagctcgctttccatgaagaaatccagcatcagcagcaacaacaaaacaacagc
aataatgctatcagtatccactcggatcctgatctctcttccctccttcactccctctct
caaccagaggatagtccggcacgttaccaagatgagtatagtaaactaaggtcgtgggct
tatagttcgcttgatctgtacaagcatgagttgcttcgtgtgctttatccagtatttgtc
cattgttatatggatattgttgctaaaggacatatccaagaggcaagaaattttttcaat
agcttccgtgaagatcatgagatgatgcactcacgagaccttcaaaagttggaaggagtt
ctttctccctctcatctggaggaaatggaatttgctcatactcttaggcagagtaaagtc
aacattaagatatgtcagtactccaatgagctcctgatgcagtatcttcggaagtcaaaa
tgcactataattctcgggattgtcaatgagcatattaacttccaagtttctcctggacaa
cccatctcaatttctgatgatcctgatgctgtaacattaattggaagcagccaggatgcg
gctaatcagataaataaaaaagaaatacgttgggggttgcttgaagattctatagaagaa
cgattggagaagacagggggttttctctcagattctgaaaagacagaaggagaaaccaaa
gagggggacatggatgagaataagaaaagatcaatagatggtggaaagcaaggagcttca
atcaaaaagtcaaaaaaggataaagctgctagtgcaacaactaaaattgctcgtcctgaa
gctaatacagtatctgcagcaccacgagtcaaacccgagcttcctttgccagtaatttcc
ttcaggccagctgaggtggaacagtctattcttgaggacttgagaaaccgtgtacagttg
agtagtgtgacactgccatctgtcagcttttatacctttatcaacacgcataatggttta
aactgttcatcaatttcacatgatggatccttggttgctggtggattctcagactcctca
ctgaaggtttgggacatggcaaagcttggacatcaagctggcaattctattttgcagggt
gaaaatgatgctgctccgagcgaacaaggccagagtacaaacagtggcaaaagatcttat
acattgtttcagggtcattcaggtccagttcattcagccacttttagccctcttggggat
tttattttgtcgtcttcagcagatacgacggttcgattatggagcacaaaactcaatgca
aatcttgtttgctacaagggccataattaccctgtctgggatgttcagttcagtcctgtg
ggacaatattttgccagtgcttcacatgatcgcacagcaaggatttggtctatggatagg
atacagcctttgaggataatggcaggtcatttgtctgatgttgattgcttgcagtggcat
gccaactgcaactacatagccactggctccagtgacaaaacagttagactgtgggatgta
caaagcggggagtgtgtccgcatttttattggtcataggagtatgattttatcattggcc
atgtcacctgatggtcgatatatggcatctgctgatgaagatgggacaatcatgatgtgg
gacctctcgagtggccgctgcatatcacctttgataggccacaattcatgcgtatggtca
cttgccttcagctgtgaaggatctcttctagcatctggttcagctgactgtactgtaaaa
ttatgggatgtaactacaagcacaaaggccccaaggacagaagaaagcaaaagtggaaat
acgaacagattgagattgttaaaaactttgccgacgaagtctactccagtttacactttg
aggttttcccgtaggaatctgcttttcgctgctggagccctcgctaaaagccagtga
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