Populus alba (white poplar): 118051388
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Entry
118051388 CDS
T07314
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
palz
Populus alba (white poplar)
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118051388
03036 Chromosome and associated proteins [BR:
palz03036
]
118051388
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
118051388
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
118051388
Chromosome and associated proteins [BR:
palz03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
118051388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
ATPase_2
SLFN-g3_helicase
AAA_22
PhoH
AAA_16
Helicase_RecD
Mg_chelatase
AAA
Med6
AAA_2
DEAD
AAA_24
DAP3
Motif
Other DBs
NCBI-GeneID:
118051388
NCBI-ProteinID:
XP_034917905
LinkDB
All DBs
Position
5:3484879..3490715
Genome browser
AA seq
882 aa
AA seq
DB search
MDTIRKDNWDDEYSIIGDMGEIGFIDFEDDKSVCNYDPATEGPIVISIPFPFVQGKPHTI
LVGEISKCAITIANTTGDPVELWGVRIFCSNPADSFTLSLKEPPSANSNAEKLYGFMEGY
SLEDRVLQPHDTLTVWLSCKPKEMGLHTSVVYFDAGDDRIERVVFLLAEDNVSRSLAPNR
PFSKTPRRKQFVVDEHVVSPRPARETTHGFKYRLPQFPIPSNLRELLKNKQVPDVMMEDL
SMGTYAAFFSILVVMEELHLEEEMRCHNMECVNMRRKGSQFLALEVPGLAERRPSLVSGD
LVFVRLENAPDSNAYQGCIYRVEADEVLLKFTNNLLTHHRDGNLYNVRFTYNRVNTRRLY
QAVQAAGGLEHDLLFPSESTKRRLIKTPGFVPFNSSLNQEQIRSVEMILGCEGAPPYVIY
GPPGTGKTMTLVEAMLQIYATRKNDRILVCAASNSAADHILEKLIGNDVAKVKENQIFRL
NASSRSYEDVHPDHIRFCYFDESIFQCPPLRALVQYRIIISTYMSSSLLYAEGVSSGHFS
HIFLDESGQASEPESMVPIANFCSRETVIVLAGDPQQLGPVIYSKDAKAFGLGKSYLERL
FECEPYRNGDEGFVIKLVRNYRCHAAILHLPSKLFYEGELLACKEDASSSISSIVDFLPN
KEFPVLFFGIQGFDERERNNPSWFNRIEASKVVEVIKKLRASGDLDEADIGVITPYRQQV
LKIKKVLENWELSDVKVGSVEQFQGQEREVIIVSTVRSTIKHNDFDRTYRLGFLSNPKRF
NVAITRARSLLIIVGNPHIVSLDPCWEKLLWFCADNNSYKGCPLPERQSSACEEPILKRN
STSEFENSCHSRVREWFQTLDEEVPQITQIVADAAEGSGCRK
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggatacaatcagaaaggataactgggatgacgaatactccatcatcggagacatgggt
gagattgggttcatcgattttgaggatgacaaatctgtctgcaactatgatcctgccact
gaaggaccaatcgttatatctatcccatttccctttgtgcaagggaagccccatactatt
cttgtaggtgaaatttcaaaatgtgcgattacaatagcaaacaccactggtgatcccgtg
gagctttggggagtgaggatattctgctcaaatcctgcagactcgtttactttgtctttg
aaagaacctccatctgcaaactcgaatgcagaaaaattatatggcttcatggagggatat
tccctcgaggacagagtacttcagccgcatgatacacttaccgtttggttatcttgcaaa
ccaaaggaaatggggttgcacacatctgtggtatattttgatgcaggtgatgataggatt
gaacgcgttgtttttcttttggctgaagacaatgtctcccgttctctggctcccaacaga
ccattttcaaaaacaccaagaagaaaacaatttgtagttgatgagcatgtggtttccccg
cgtcctgccagggaaacaactcatggatttaagtataggcttcctcaatttccaataccc
agtaatctcagagagttattgaagaataagcaagtccctgatgttatgatggaagatttg
agtatggggacctatgctgcattcttcagtatattggttgtaatggaagagctacatcta
gaggaagaaatgaggtgccataacatggagtgtgttaacatgagaaggaaggggtctcag
tttttggctctcgaggtccctgggctggctgaacgaaggccttcacttgtgagtggtgat
cttgtttttgtgaggcttgaaaatgcacctgacagcaatgcatatcagggatgcatttac
cgagttgaggctgatgaagtgcttttgaaatttaccaacaatcttcttacccatcaccgg
gatggaaacttatataatgttcgatttacatataatagggtgaatacgaggaggttgtat
caagctgtgcaagcagcagggggcttagagcatgatcttctatttccatctgaatcaacc
aaaaggagactgatcaagacacctgggttcgtgccttttaatagtagtctcaatcaggag
cagatacgttctgttgagatgatccttggctgtgaaggtgctcctccctatgtcatttat
gggcctccaggtactggtaaaacaatgaccttggtggaagcaatgttgcaaatatatgca
acaagaaagaatgatcgaattcttgtgtgtgctgcttcgaacagtgcagcagatcacata
ttagaaaaactcattggcaatgatgttgctaaagtcaaagagaatcagatctttaggcta
aacgcaagtagccgttcttatgaagacgttcaccctgatcatatccgcttttgctatttt
gacgaatccatttttcaatgtcctcctctcagggccttggtacaatacaggatcattatt
tctacgtatatgagttcatccctactgtacgcagaaggtgtcagcagtggccatttctct
catatcttcttagatgaatctggccaggcttcagaaccagaaagcatggttcctatagct
aacttttgcagcagggaaactgtcattgttctagcaggtgacccacagcaactaggtcct
gtcatatattccaaagatgctaaggcttttgggttgggaaaatcttatcttgaaaggctg
tttgaatgtgaaccttacagaaatggtgatgaaggttttgtaataaaattagtgaggaat
tatcgatgtcatgcagcaattctacacctgccatcaaaacttttctatgaaggggagttg
cttgcatgtaaagaagatgcctcttcctccattagttctattgtggattttcttcctaat
aaagaatttccagttttattctttggaattcaaggcttcgacgagagagaaagaaacaat
ccttcatggtttaacagaatcgaggccagcaaggttgttgaagttatcaaaaagctcaga
gcaagtggagatctagatgaggcagatataggagtaataacaccttatcggcagcaggtc
ctgaagatcaaaaaggtacttgaaaattgggaattgtcggatgttaaggttgggagtgtt
gaacagtttcagggacaggagagagaggtcattatcgtatctacggtaaggtcaactata
aagcacaatgactttgacagaacctaccgtctggggtttcttagcaacccaaagaggttt
aatgttgcaattacccgagccagatccttgcttatcattgttgggaatccacacatagtc
agcctggatccttgctgggaaaagcttttgtggttttgtgccgacaataactcctacaag
ggctgccctttacctgaaagacaatcctctgcatgtgaagagcctatcctgaaaagaaat
tcaactagtgaattcgagaactcgtgccattcgagagtcagggaatggtttcagacactt
gatgaagaggttccacagattacacagattgtcgcggacgcagctgaggggtctggctgc
cggaaataa
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