Populus alba (white poplar): 118052246
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Entry
118052246 CDS
T07314
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
palz
Populus alba (white poplar)
Pathway
palz03013
Nucleocytoplasmic transport
palz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118052246
03015 mRNA surveillance pathway
118052246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118052246
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118052246
mRNA cycle factors
P-body specific factors
118052246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Xpo1
Motif
Other DBs
NCBI-GeneID:
118052246
NCBI-ProteinID:
XP_034919041
LinkDB
All DBs
Position
8:complement(2676637..2689619)
Genome browser
AA seq
1189 aa
AA seq
DB search
MDHHEDESRGGSVTPRKQDDEEAVARLEEMKKSIEAKVALRQSNLNPERPDSGFLRTLDS
SIKRNTAVIKKLKQINEEQKEGLMEDLRNVNLSKFVSEAVTSICDAKLRTSDIQAAVQIC
SLLHQRYKDFSPSLVQGLLKVFFPGKSGEDLDVDKNSKAMKKRSTLKLLLELYFVGVTED
SSIFINIIKDLTSIENLKDRDTTQTNLTLLASFARQGRVFLGLPLSGQETQEEFLKGLSI
TTDQKKIFRKAFHTYYDVVAELLQSEHASLRQMEHENAKMLNAKGELSDDNVSSYEKLRK
SYDQLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEDASSTAAGKDTSLLEALWDDEDTR
AFYECLPDLRAFVPAVLLGEAEPKANEHSAKTQDQPSELAPESDQGQPTQDMAEVSAESG
PLQEGKSTEKGKDKEEKDKEKVKDPEKEKGKEKDAERKGETEKEKLKSLEGTNLDALLQR
LPGCVSRDLIDQLTVDFCYLNSKSSRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD
VSSMLLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFRIAPASTVFSCLKACLDDF
THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC
KPPERSARVSKVRPPLYQYIRKLLFSDLDKSSIEHVLRQLRKLPWSECEAYLLKCFMKVH
KGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLELNDYGMQQRRIAHMRFLGE
LYNYEHVDSSVIFETLYWILVFGHDTPEQDMLDPPEDCFRIRMVITLLDTCGHYFDRGSS
KRKLNRFLMHFQRYILSKGLLPLDVEFDLQDLFAELRPNMIRYSSIEEVNAALIELEENE
RTVSTDKFNSEKHSDTDKPLCRTTSSTISANGQSILNGNEENGSHEDIGGSDTDSGSGTI
DQDGHDEEELDEENHDGGVDTEDEDDDGDGPASEEEDEVHVRQKVAEVDPLEVASFEQEL
RAVMQESMEQRRQELRGRPALNMVIPMNLFEGSAKDHHGRAVGGESGDEDEDAGGNKDVQ
VKVLVKRGNKQQAKQLYIPRDCSLVQSTKQKEAAEFEEKQDIKRLVLEYNDREEEENNGL
GTQTLNWMPGGTSRVTSRGSTWEGSSGRGTGSRYRHHHHSGSGLHGRRR
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccacgaagatgagagccgtggtggaagtgtaactcctagaaagcaagacgat
gaggaagcggttgctcgactcgaggaaatgaagaaatctatcgaggcaaaagttgctctt
cgtcaaagcaatttgaatcctgaaaggcctgattcaggatttctcaggacactggattcc
agcattaagcgcaatactgctgttatcaaaaaattaaagcagataaatgaagaacagaag
gaaggactgatggaagatttgcgaaatgtgaaccttagcaaatttgtcagtgaagctgtg
acatccatttgtgatgcaaaacttagaacttctgacatacaagcagctgttcagatctgt
tcattgcttcatcaacggtacaaagacttctcaccaagcctggtacaggggctcttaaag
gtcttttttcctggaaaatcaggggaagacttggacgtggacaagaactcaaaggctatg
aagaagcgaagcaccttaaaactgcttttggaactttactttgttggagttacagaagac
agcagtattttcatcaatattattaaggatcttactagcatagaaaacttgaaggacaga
gatactactcagacaaatttgactctccttgctagttttgctcgacaaggaagagttttt
ctggggcttcccctatctggacaagaaacccaggaagagtttctcaagggccttagcatc
accactgatcaaaagaaaatcttcaggaaagcctttcacacatattatgatgttgtcgcc
gaactacttcagtcagagcatgcttcacttcgtcaaatggagcatgaaaatgcaaagatg
ctgaatgctaaaggagagctgagtgatgataatgtttcatcatatgaaaagctgcgaaaa
tcttatgaccaattgtaccgtaatgtgtcatctttagcagaagcacttgatatgcaaccc
ccagtgatgccagaagatggtcatacaactagggttactagtggggaggacgcttcatca
actgcagcagggaaagatacttctctccttgaagctttgtgggatgatgaagatactaga
gccttctatgaatgcttaccagatctcagagcatttgttccagcagtattattgggagag
gcagagccaaaagcaaatgagcattctgcgaagactcaagatcaaccaagtgagctggca
cctgaatcagatcaaggccaacccacccaagatatggcagaggtttctgcagagtctggc
cctttgcaggagggaaaaagtacagagaaggggaaggataaggaagaaaaagataaagaa
aaggtgaaagatcctgaaaaggagaaagggaaagaaaaagatgcagagagaaaaggagaa
actgagaaggagaaactcaaaagtcttgaagggactaatttggatgctctgttacagagg
ctgcctggttgcgtcagccgtgacctaatcgatcaattgactgtagatttttgttatctg
aattcaaagtcaagtcggaagaagcttgtaagggcattatttaatgtacccaggacatct
ctagaactacttccatactactcacgcatggttgccacactctcaacatgcatgaaggat
gtctcttccatgctcttacaaatgttagaggaggagttcaatttcttaataaataaaaag
gatcaaatgaatatcgagacaaagatcaggaatattagatttattggagagctctgcaag
ttcagaattgcgccagcaagcactgtttttagttgcttgaaggcctgtttagatgatttc
actcaccataacattgatgttgcttgcaatcttctcgagacatgtggccgttttctgtat
cgttctcctgaaactactgtacgcatggctaatatgttggagatacttatgcgcttgaaa
aatgtcaagaatttggatcctcggcatagcacccttgtagaaaatgcttattatctgtgc
aagccacctgaaaggtctgcacgagtgtctaaagtccgtcctcccttgtatcagtatatc
agaaaattactattctccgatctagacaagtcttccattgagcatgtgctccggcaactt
cgtaaattaccatggagtgaatgtgaggcatatcttttaaagtgttttatgaaggtccat
aaagggaaatatgggcaaattcacttgattgcttctctgactgctggcttaagccgttat
catgatgaatttgcagtggcagttgttgatgaggttttggaggagattaggcttgggctg
gagctaaatgactatgggatgcagcagaggcgcatagcccacatgcgattcttgggggaa
ctatacaattatgaacacgtggattcgtctgtgatttttgagacgctgtactggatcctt
gtgtttggtcatgacactccagagcaagacatgctagatccaccagaggattgtttccgc
atcaggatggttatcactcttctggacacttgcggacactattttgaccgaggctcttct
aagaggaaacttaatcggtttttaatgcactttcagaggtatattctcagcaaaggtttg
ctacctcttgatgttgaatttgatttgcaggacttatttgctgaattacgtccaaatatg
atacggtattcatcaattgaagaagtcaatgctgctcttatagaactcgaggaaaatgaa
cgaactgtctcaactgacaagttcaatagtgaaaagcactctgacactgacaaaccgtta
tgtaggactacttccagtaccatctctgctaatggacaaagcattttgaatgggaatgag
gaaaatggatcccatgaggacattggtggcagtgacactgattcaggcagtggcaccatt
gaccaggatggacatgatgaagaagagttggacgaagagaatcatgatggtggggttgac
acagaggatgaggatgatgatggggatggacctgcttctgaggaggaggatgaagtccac
gttagacaaaaggttgcagaggtggaccctcttgaagtagccagttttgagcaggaactg
agagctgtaatgcaggagagcatggagcagcgcaggcaggaactccgtggtcgaccggca
ttaaatatggtgatacccatgaacttgtttgaggggtctgctaaggatcatcatggaagg
gcggttggaggggaaagtggtgacgaggatgaggatgctggaggaaacaaggatgttcag
gtgaaagtgcttgtgaagcgtgggaataagcaacaagcaaagcagctgtacattcctagg
gattgctctcttgtgcagagcacaaaacagaaagaagcagctgagtttgaagagaagcaa
gacatcaagaggctggtgttggagtataatgatagagaggaggaggagaataatggattg
gggactcagactttgaattggatgccaggtggtaccagcagagttaccagccgtggcagc
acatgggaaggaagtagtggaagaggcactggatcacgttaccggcatcatcatcattca
ggtagtggactccatggcagaagaaggtga
DBGET
integrated database retrieval system
