Populus alba (white poplar): 118052720
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Entry
118052720 CDS
T07314
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
palz
Populus alba (white poplar)
Pathway
palz03008
Ribosome biogenesis in eukaryotes
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
118052720
09123 Folding, sorting and degradation
03018 RNA degradation
118052720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palz03021
]
118052720
03019 Messenger RNA biogenesis [BR:
palz03019
]
118052720
03009 Ribosome biogenesis [BR:
palz03009
]
118052720
03016 Transfer RNA biogenesis [BR:
palz03016
]
118052720
Transcription machinery [BR:
palz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118052720
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
118052720
Ribosome biogenesis [BR:
palz03009
]
Eukaryotic type
Pre-60S particles
RNases
118052720
Transfer RNA biogenesis [BR:
palz03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
118052720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
SPATA1_C
Alg17C_C
Motif
Other DBs
NCBI-GeneID:
118052720
NCBI-ProteinID:
XP_034919630
LinkDB
All DBs
Position
2:complement(1720419..1731595)
Genome browser
AA seq
1087 aa
AA seq
DB search
MGVPAFYRWLAEKYPLVVVDVIEEEPVVIEGVKIPVDTSRPNPNNIEYDNLYLDMNGIIH
PCFHPEDRPSPTSFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDAADAAAEEERLREEFEKEGRKLPPKESSQTFDSNVITPGTEFMAVLSIALQYYIHL
RLNYDPGWKKIKVILSDANVPGEGEHKIMSYIRLQRNLPGYNPNTHHCLYGLDADLIMLA
LATHEAHFSILREIVFTPGQQDKCFLCGQMGHLAADCEGKAKRKAGEFDEKGNDVAVPKK
PYQFLNIWILREYLEYEFRIPNPPFVIDLERIVDDFIFICFFVGNDFLPHMPTLEIHEGA
INLLMAVYKKEFRVLDGYLTDGCKPNLNRVEHFIQAVGSYEDKIFQKRARLHQRQAERIK
REKAQARRGDDAEPQNQPESLVAVARFHGSRLASAPTPSPYQDDGTHSQTSDGKGSSVRR
HKVARLSSTANIGAAIVEPENSLEIEVCFPPSGEVHENKEELKTKLKELLREKSDVFNSK
NHGEDKVKLGEPGWKERYYEQKFSAKTLEEMEDIRRDVVLRYTEGLCWVMHYYYEGVCSW
QWFYPYHYAPFASDLKDLGQLDISFELGSPFKPFNQLLGVFPAASSHALPVHYRKLMTDP
NSPIIDFYPTDFEVDMNGKQYAWQGIAKLPFIDESRLLAEVQKIEHTLTEEEARRNSMMF
DMLFVSSSHSLSESMYLLDNHCKQLTDKERAEVKERINPELSDGMNGYLSPCAGDTHPPI
VRSPVASMEDILANEVICVIYGLPDPHTHITCPPAGVIFPKKTVDQGDLKPEPILWHEDS
GRRPWENDRRNPPGTISAHHLGEASHRLVSNSLQQKIDRNGYGNHMHTPPPPYFAAPCGP
PHSFYSNGLHNHGHYGTLQPEIDYSHAGYPRSASPHMPTHYDHGFGSAGANPSYRRPRPQ
NERENQMSGPHPRQVYHPPEFHQNGRPRHPHGPVARASTGNSTFAYQGGFDASYQSYQSP
GDGSHQQWGGRFPPPANHSNPSGNQFSALDHRGNKMPPQHGVANRRPQPPPGSANRRPHP
PAGYGRQ
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccggccttttatcggtggttagcggagaagtatccgttagtggttgtggat
gtgatcgaagaagaaccggttgtcatcgaaggcgttaagattcctgtggatacaagtaga
cctaaccctaacaatatcgagtatgataatttatatctcgatatgaacgggattattcat
ccttgctttcatcccgaagacagaccttcgcctacttctttcgatgaggtgtttcagtgt
atgtttgattatattgataggctttttgtgatggtgaggcctcggaaattgctgtacatg
gcaattgatggagttgcacctcgtgcgaaaatgaatcagcagcggtctaggcgttttagg
gcagctaaagatgcagctgatgcggctgctgaagaagaaaggctaagagaggagttcgag
aaggagggcaggaagcttccccctaaggagtcatctcaaacttttgattccaatgttatc
actcctggaactgaatttatggctgttttgtcaattgcattgcagtactatattcatctt
agactaaattatgatcctggatggaagaaaattaaggttatcctttctgatgcaaatgtt
cctggggaaggggaacacaaaatcatgtcctatatccgtcttcaaagaaaccttcccggt
tataatccaaatacacaccattgcctgtatggtttggatgcagatttaatcatgttggct
ctggctacccatgaagctcatttttcaattcttcgagagattgttttcactcctggacaa
caagacaaatgcttcctatgtggtcagatgggtcatttagcagctgattgtgaaggaaag
gcgaagagaaaggcaggagaatttgatgagaaaggcaatgacgttgctgtgcccaaaaaa
ccataccagtttctcaatatctggattcttagagagtatttggagtatgaattcagaatt
cctaatcctccatttgtgattgatcttgaacgcattgtagatgattttatattcatttgt
ttctttgttggcaatgatttcctgccacacatgcccaccctggagattcatgagggtgca
atcaacttgctgatggctgtttataagaaggaatttagggtgcttgatgggtatttgact
gatggctgcaagcctaatttaaatagagtggagcattttattcaagctgtgggttcatat
gaagataagatattccagaaaagagcacgattgcaccagcgtcaggctgaaagaattaag
cgtgaaaaggcacaggcaaggagaggtgatgatgcagagcctcaaaatcaacctgaatct
ttggttgcagttgcccgatttcatggctctcgtcttgcttcagctcctacaccttcacca
tatcaggatgatggaacacattctcagacatctgatggtaaaggatcctctgttcggagg
cataaagttgcacgtttgtcttcaacagccaatattggtgctgccattgtggagccagag
aatagtctggaaatagaagtatgttttcctccttcaggggaggtacatgaaaacaaagaa
gaattgaaaactaagcttaaggagttacttcgtgagaaatctgatgtttttaactcaaag
aatcatggagaagacaaggtcaaattgggagaaccaggttggaaggaaagatattatgaa
cagaagttttctgcaaaaactctggaggaaatggaagatatacggagagatgttgttttg
agatatacagaagggctgtgttgggtcatgcattattattatgaaggcgtttgttcttgg
cagtggttttatccttatcactatgcgccctttgcttcagatctcaaagatcttggtcaa
ctggacattagttttgaacttggttctccattcaaaccattcaaccagcttttgggggtt
ttccctgcagcaagttcccatgctctccctgtacactataggaaattgatgacggatcca
aattcacctattattgatttttatcctactgattttgaagtggacatgaatggaaaacaa
tatgcatggcagggtattgcaaaacttcccttcattgatgaatctcgccttcttgcagag
gtccaaaaaattgagcacacattaacggaggaagaagcaaggagaaacagtatgatgttt
gacatgctttttgtgtcatcatctcattctctctctgagagcatgtatttactcgataat
cattgcaaacaattaacagacaaagaacgagctgaagtcaaggagcgtatcaatcctgag
ttgagtgatgggatgaatggctatttatctccttgtgctggagatactcaccctcctata
gtcaggtctccagttgcaagcatggaagacattttggccaatgaagtcatatgtgttata
tacggacttcctgatccacacacacacatcacttgtccacctgctggtgttatattcccc
aaaaagacggtagatcaaggtgatctgaaacctgaaccaattttatggcatgaggattct
gggaggaggccttgggagaatgacagacgaaatccccctggaaccatctctgcccatcat
cttggggaggcatcacatcgactagtttccaatagtctacaacagaagatagatcgcaat
ggctatggcaatcatatgcataccccaccaccaccttattttgcagctccctgcggccca
ccacactctttctattcaaatgggctgcacaatcatggacactatggaactttacaacca
gaaatagattattctcatgcaggttatccccgctctgcaagtcctcatatgccaactcac
tatgaccatggatttggttcggcaggtgccaacccctcgtatagaaggccccgtcctcag
aatgaaagagagaaccaaatgagtgggccacatccaaggcaagtgtaccacccacctgaa
tttcatcagaatggtagaccaaggcatccccatgggccagtggcacgtgcgtcaacgggg
aactcaacatttgcttatcaaggtggttttgacgcctcctatcagagttaccaatcacct
ggagatggtagtcaccagcaatggggtggtaggttccccccgccagccaaccatagcaat
cccagcggcaaccaattttcagcactggatcatagaggaaataaaatgccaccacaacat
ggtgtagcaaaccggagaccccagccacctcctggcagtgctaaccggaggccccatcca
ccagctggatatggtcgtcaatga
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