Populus alba (white poplar): 118052916
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Entry
118052916 CDS
T07314
Name
(RefSeq) protein PAT1 homolog 2
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118052916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118052916
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118052916
mRNA degradation factors
5'-3' decay
Decapping complex
118052916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIA
Motif
Other DBs
NCBI-GeneID:
118052916
NCBI-ProteinID:
XP_034919911
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Position
6:complement(1898625..1906377)
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AA seq
790 aa
AA seq
DB search
MERSDGKDFKEFTDSSSGALFDASRYEFFGQHAVEEVELGGLEDEGDNLVLGPADDEYRL
FDRDEGASLGSLSEIDDLASTFAKLNRVVTGPRNPGVIGDRGSGSFSRESSSATDWAQDG
EFAGWLDQQMFCAENAQDSKRWSSQPQPSSARFSESKPLYRTSSYPQQPLQQPHFSSEPI
PVPKSNFTSFPPPGGASPHHLNVASRAGGLQSHLSAPNLSPLSNSNLHLAGLQHGLHYGG
NLPQIMSPGLSFNNRPQKHWLNHAGLLHVDQSRLLESILQQQLSHQNGLMSAHLMSPQQQ
LQQQRLHSSLQPSLAHFAAMQSQFFNSHPSSLHIRDQKHKSSSQRNRRFSQGSDTSSQKS
DSGWVQFRSKHMTADEIESILKMQHAATHSTDPYIDDYYHQASLAKKSTGSRIKHNFCPS
HMKELPSRSRNSADQHSHLHFDALGKIPLPPIRKPRPLLEVDSPSSGDGNSEQISERPLE
QEPMLAARITIEDSLSLLLDVDDIDRFLQCNQSQDGGAQLRRRRQNLLEGLAASLQLVDP
LGQTGHSVGLASKDDIVFLRLVSLPKGQKLICKFLQLLFPGNELTRVVCMAIFRHLRFLF
GGIPSDTDAADTTTNLTKTVSACVNGMDLHALSACLVAVVCSSEQPPFRPLGSPAGDGAT
VILKCLLERASKLLHGPQASANCAMPNFALWQASFDEFFDLLTKYCLIKYDTILHSVYAK
TPPSTEGIDLEVRAATKQEMPVELLRACLPHTNEHQMELLRHFGQQRNTSTGLSAPPGNS
GHINSESVMS
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atggagcgatctgatggcaaagatttcaaggaattcactgattcttcttcgggtgcactc
tttgatgcttcacggtacgaattttttggtcaacatgctgtggaagaagtggagttgggt
ggtttagaagatgaaggtgacaatcttgtgcttggacctgccgatgatgagtatcgtttg
tttgatagagatgaaggtgcaagtttaggatctttatctgaaattgatgatctggcaagt
actttcgcaaagttgaacagagttgtaaccggaccaagaaatccaggagttattggtgac
agaggatctggatcattttcaagggaaagttcatctgctactgattgggcacaagatgga
gagtttgctggctggttagatcaacaaatgttttgtgcagaaaatgctcaggacagcaag
agatggtcatcacagccccagccttcttcggctcgtttctcagaatcaaaaccattgtac
agaacttcctcgtatccccagcagccactgcagcagcctcacttctcaagtgaaccaatt
cctgtacccaaatcaaatttcacatctttccccccacctggtggtgcttcaccacaccac
ctcaatgttgcttctcgtgctggtggactgcagtcgcacttgtctgctccaaacctctct
cctttgtccaactctaatcttcatctggctggtttacagcatgggctacattatggtgga
aatctgccccagatcatgtctcctggcctttcttttaataataggccacaaaaacattgg
cttaatcatgctggtctattacatgtagatcagtctaggctcttagagagtatattgcag
cagcaactatcgcatcaaaatggcctaatgtctgcccatttgatgtcaccacagcagcaa
ttgcaacagcagagactgcactcttcacttcaaccatcactggctcactttgcagcaatg
caatctcagttctttaattcccatccttcatcattgcatatcagggatcaaaaacataaa
tcatcctctcaaagaaaccggcgcttttcgcaaggatctgacactagtagtcagaaaagt
gatagtggctgggtgcaattccgatccaagcatatgacagctgatgaaatagagagtatt
ctgaaaatgcagcatgctgccactcatagcactgacccatatatagatgattactaccac
caagcttctcttgccaagaaatctactgggtcaagaattaaacacaatttctgcccatct
cacatgaaggagctcccttctcgatctcgtaacagtgcagaccagcattctcatctccat
tttgatgctctcgggaagattcctctcccacccattcgtaaacctcgcccccttcttgaa
gttgattctcctagttctggtgatggaaactctgaacaaatctctgagaggcctttggaa
caggaacctatgcttgcagctagaatcactattgaagatagcttatctcttcttcttgat
gtagatgatattgatcgtttcctgcagtgtaatcagtcccaggatggtggggctcagctc
aggcgtaggcggcagaacttgcttgaaggcttggcagcatcactccagcttgttgaccca
cttggacaaactggccactctgttggactagcctcgaaggatgacattgtgttcctgcgg
ttagtatctcttcccaagggtcaaaagcttatctgcaagtttcttcagcttctattccct
ggcaatgaactcacccgtgttgtctgcatggctattttccgtcacttgagatttttgttt
ggtggcattccctcggatacagatgcagccgacacgactacaaatctcacaaagacagtt
tctgcatgtgtaaatggcatggatcttcatgcattgagtgcttgcctggttgcagtagtt
tgttcttcagagcagccaccttttcggcctcttggtagtcctgctggggatggggccaca
gttattttgaaatgtcttcttgaaagagctagtaaactattacatggtcctcaggcttct
gccaactgtgctatgcccaattttgctctttggcaggcatcatttgatgaattttttgat
cttcttacgaagtactgcctgattaaatatgacaccatactgcattcagtctatgcaaag
acaccacctagtacagaaggtattgatttggaggtgcgtgcagctacaaaacaagaaatg
cccgttgagcttttacgagcttgccttcctcatacaaatgaacaccagatggagctctta
agacattttgggcagcaacgcaataccagcactgggctgagtgcacctccagggaatagt
ggccacataaactctgaatcagtgatgagttga
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