Populus alba (white poplar): 118052984
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Entry
118052984 CDS
T07314
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
palz
Populus alba (white poplar)
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palz03021
]
118052984
03036 Chromosome and associated proteins [BR:
palz03036
]
118052984
Transcription machinery [BR:
palz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
118052984
Chromosome and associated proteins [BR:
palz03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
118052984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
SPT6_acidic
YqgF
Spt6_S1
HTH_44
Tex_central_region
HHH_9
HHH_3
SH2
Tex_N
MRP-S34
Motif
Other DBs
NCBI-GeneID:
118052984
NCBI-ProteinID:
XP_034919984
LinkDB
All DBs
Position
6:2337517..2346939
Genome browser
AA seq
1646 aa
AA seq
DB search
MGKNVVSDEEDEVELEDEDEREPVDGDRIGRDDDDDEDEEGQDEYEKDDFIVDDVEEEEE
VGEEEDRADSDEERHKKKKKKKKREAEDVLDEDDYELLRDNNVYHHRPKDSKKFKRLKKA
QRDSDEDRYGLSDDEFDGSGKGGRTAEEKLKRSLFGDDEGVPLEDMPEEEEQEEVEEDAD
IGDEDEMADFIVDEDDDDGTLVRRKKLKKKKSQQASGVSSSALQEAQEIFGDVDELIQIR
RQGLESGEWRERRLEDEFEPTVLSEKYMTEKDDQIRMTDIPERMQVSEGSTGPPPLDDFS
IMEESNWIYSQIASGTLPLFAESGLLINKDDVTRLLELHHIQKLDIPFIAMYRKEECLSL
LKDTEQHEDDENPYDTGRIPTFKWHKVLWAIQDLDRKWLLLQKRKSALNAYYNKRFEEES
RRIYDETRLNLNQQLFESILKSLKTAESEREVDDVDAKFNLHFPPGEVVVDEGQYKRPMR
RSQYSVCSKAGLWEVASKFGYSAEQLGMQLSLLKMEDELQDAKETPEEMASNFTCAMFES
PQTVLKGARHMAAVEISCEPCVRRYVRLIFMDKAVVSTSPTSDGKAAIDSFHQFAGIKWL
REKPVKKFEDAQWLLIQKAEEEKLLQVTIKLPQKVMDQLIDDCNGRYLSIGVSKYAQLWN
EQRSLILKDALFAFLLPSMEKEARSLLTSRAKNRLLWEYGKVFWNKVSVGPYQRKESDIS
MDDEAAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYAGSLTLRSQHANDQQRKKNDQQR
VLKFMTDHQPHVVVLGAVHLSCTKLKDDIYEIIFKMVEENPRDVGHEMDELSIVYGDESL
PRLYENSRISSDQLPGQSGIVKRAVALGRYLQNPLAMVATLCGPAREILSWKLNPLENFL
TPDDKYMVIEQVMVDATNQVGLDINLATSHEWLFAPLQFISGLGPRKAASLQRSLVRTGA
IFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGLAASSSQFIDVLDDTRIHPESYGLAQELA
KVIYEKDSGDVNDDDDALEMAIEYVKERPNLLKTFVFDKYLEDKKRENKKETFMDIRREL
IQGFQDWRKQYKEPTQDEEFYMISGETEDTLAEGIIVQATVRRVQGGKAICALESGLTGI
LTKEDYTDDWRDIPELSDKLREDDILTCKIKSIQKNRYQVFLVCKDSEMRNNRYQLARNL
DHYYHEDQSSLRSEQEKVRKERELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDPGESI
IRPSSRGPSYLTLTLKVYNGVYAHKDIVEGGKEHKDITSVLRIGKTLKIGEDTFEDLDEV
MDRYVDPLVSYLKAMLSYRKFRSGTKAEVDELLRIEKSQQPTRIVYAFGICHEHPGTFIL
TYIRSTNPHHEYVGLYPKGFKFRKRMFEDIDRLVAYFQKHIDDSLHESAPSIRSVAAMVP
MRSPATGGSSWGGSTYEGGRRGQSFDRERSSGPGSRTGRNDYRSGGSRDGHQSGAPRPYS
GRGRGRGSYNNGGGSNSGNERRDSGYDKPRWDSGTKDGDEGWGSFPGAKVQNSPGREAFP
GGWGTGASSGGNGWGGGASGGDNSGWGHGTGGGTDSGNSGRGATSSKRDSAQRGWGAAGG
GNGNGSDSGHGSRGGSTNDENSGWGQ
NT seq
4941 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaaacgtggtttctgacgaagaagatgaggtggagttagaagacgaagatgag
agagagccagttgatggagatagaattggacgagacgacgacgacgacgaggatgaagaa
gggcaggatgaatatgagaaagatgattttatagtggatgatgtcgaggaggaagaagag
gtgggagaagaagaggatagggcagatagcgacgaagagaggcacaagaagaagaagaaa
aagaagaaaagagaagctgaggatgtactcgatgaagatgactacgagctcctgcgagac
aacaatgtgtatcaccatcggccaaaggatagcaaaaaatttaagcgtttgaagaaagct
cagagggattcagatgaggaccgatatgggctttccgatgacgaatttgatggaagtggt
aaaggtggtcgaactgctgaggagaaactgaagcgcagcttatttggtgatgatgaaggg
gttccacttgaggatatgcctgaagaggaggagcaagaagaagtggaagaggatgcggac
attggtgacgaggatgagatggctgattttattgtggatgaagatgatgatgatggaact
ctagtgagacgcaagaaactaaagaaaaagaaatctcagcaggcatctggagtttcatct
tctgccttgcaagaagctcaagaaatatttggtgatgttgatgaactcatacagatacgc
aggcaagggttagaatctggtgagtggagagaaaggagactggaagatgaatttgagcca
actgtcctttctgaaaaatacatgactgagaaggatgatcagatccggatgactgatatt
ccagaaagaatgcaggtatctgagggaagcactggtcctcctccattggatgatttcagc
ataatggaggagagcaactggatttatagtcagattgcaagtggaacattacctttgttt
gcggagagtggactgcttataaacaaggatgatgtcacccgtttattggaattacatcac
attcagaagttagatattcccttcattgctatgtatcggaaggaagagtgtttaagcctg
ttgaaagatactgagcaacatgaagatgatgaaaatccttatgacactggtagaattccc
acattcaagtggcacaaggtgctttgggccatccaggacttggacaggaagtggttactt
cttcagaaacgaaagagtgccctcaatgcttactacaataagcgctttgaagaagaatct
cgacggatatatgatgaaacgagactcaatttaaaccagcagctgtttgagtccattctt
aaatcactcaagactgcagaatcggaaagagaggttgatgatgttgatgcaaaatttaac
ctgcattttcctcctggtgaggttgtcgtggatgaaggacaatacaaaaggcccatgcgg
agatcacaatacagtgtctgtagtaaagctggcctatgggaagttgcaagcaaatttggg
tacagtgccgagcaactgggaatgcagttatctttattaaagatggaggacgagttgcag
gatgccaaggaaacaccagaggagatggcttcaaattttacatgtgcaatgtttgaaagt
ccccaaacagttcttaaaggggctaggcacatggctgcagttgagataagttgtgagccc
tgtgtcaggagatatgtccgtttaatttttatggacaaggctgtagtgtctacaagtcca
acatcagatgggaaagctgctatagattctttccatcagtttgcaggtatcaagtggttg
cgtgaaaagccagtcaagaagtttgaggatgcacagtggctccttatccagaaagctgaa
gaggagaaacttcttcaagtcactattaagcttccacaaaaagttatggatcaattgatt
gatgactgtaacggtcgctacctgagtattggtgttagtaaatatgctcaactgtggaat
gagcaaaggagtttgatactgaaggatgcactctttgcttttttgttgccttcaatggag
aaagaggctaggtcattgttgacaagtagagctaaaaaccggttgctttgggaatatggg
aaggttttttggaataaagtctctgtgggcccatatcaacggaaagaaagtgatatttcc
atggatgatgaagctgcacctagggttatggcttgctgttggggtcctggaaagccagca
actacttttgtgatgctagattcatctggggaggttttagatgtactttacgctgggtcc
cttaccttacgatctcagcatgctaatgatcagcaacgcaagaaaaatgatcagcaacgt
gttctgaaatttatgacagaccaccagccacacgtggttgttcttggagctgtgcacttg
tcttgtactaaactgaaggatgacatttacgagattatttttaaaatggtggaggaaaat
cctagagatgttggacatgagatggatgaactgagcattgtctatggggacgagtctctc
cctcgtctttatgaaaattctcggatttcttctgatcaactacctgggcagtcaggcatt
gttaaacgtgctgttgctcttggccgttatctacaaaatcccttggctatggttgcaacg
ctatgtggaccagctagggagattctatcttggaaactaaatcctttggagaactttctc
actcctgatgataaatacatggtgattgaacaagtcatggtagatgccacaaaccaggtg
ggcttagacattaatttggccacaagccatgaatggttatttgctcctttacaattcatc
tctgggcttggacccagaaaggcagcatctttgcagaggtctctggtaagaactggagcg
attttcactcgcaaggattttgtgacagctcatggtcttggtaaaaaggtgtttgtcaat
gctgttggatttttgcgtgtccggagaagtggccttgctgctagcagcagccagttcatt
gacgtgttggatgatacaaggatacatccagagtcctatggtctcgcacaggagttggca
aaagtcatttatgaaaaggacagtggtgatgtaaatgatgatgatgatgcactagagatg
gcaatagagtatgttaaagagcggcctaatttattgaaaacatttgttttcgataagtat
ctcgaagacaagaagcgggaaaacaagaaggagactttcatggatataagaagggaatta
atacaaggtttccaagattggcgtaaacagtataaagaaccaacccaggatgaggaattt
tatatgatttcaggtgaaaccgaggatacccttgctgaagggataattgtacaagccaca
gttcgcagggtgcaaggtggaaaggcaatatgtgcattggaatctggtctgactgggatt
cttacgaaggaggactacactgatgattggagggatatacctgagttgtccgacaagctg
cgtgaagatgatatactgacttgcaagataaaatcaattcaaaagaatagatatcaagtg
ttccttgtttgcaaagacagtgagatgagaaataaccgatatcagctggcccgaaacctt
gatcactattatcatgaagaccagagcagtctgaggagtgagcaggagaaggttcgcaaa
gagagggagcttgcaaagaaacattttaagcctaggatgattgttcatccacgcttccag
aatataacggctgatgaagcaatggagttcttatctgacaaggatcctggagaaagtatt
attcgtcctagttctcgtgggccatcgtatttaactctaactcttaaagtttacaacgga
gtttatgctcacaaagatatagttgaaggtgggaaggaacacaaagatatcacgagtgta
cttcgtattgggaagacattgaaaattggggaggacacatttgaggatttggatgaggta
atggaccgctatgttgatcccttggtgagctacctaaaggcaatgctaagttatcgcaag
ttcagaagtggcaccaaagcagaagttgatgagctccttaggattgagaaatcacaacag
cctactaggatagtttatgcatttggcatttgtcatgaacacccaggcacattcattctc
acttatataaggagtacaaatccccatcacgagtatgttggtctatatcccaagggattc
aagttccgaaagcgtatgtttgaggacattgatcggctggtggcatattttcaaaagcat
atagatgattctttgcatgaatcagcaccatcaattaggtcagttgctgctatggtccca
atgcgaagccctgcaaccgggggctcttcctggggtggttcaacctatgaaggtggtcgg
agagggcagtcttttgacagagaacgttcttctggtccaggttccaggacaggtcgaaat
gattatagaagtggtggtagtcgagatggtcaccagagtggggcaccaagaccatacagt
ggacgaggacgtggtcgtggctcatataacaatggcggcggaagtaatagtggcaatgaa
aggcgggattctggttatgataagcccagatgggattcaggaaccaaggatggtgatgaa
ggctggggcagtttcccaggagccaaagtccaaaactcacctggcagggaagcttttcct
ggtggctggggaactggtgcaagcagtggtggaaatggttggggtggtggagctagtggt
ggtgataatagtgggtggggccatggaactggtggtgggaccgatagtgggaattctggg
cggggtgctactagctcgaagagagattcagcacaaaggggatggggtgctgctggaggt
ggaaatggcaatggtagtgactctggtcatggaagtcgtggtggaagcactaacgatgag
aattctgggtgggggcaataa
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