Populus alba (white poplar): 118053034
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Entry
118053034 CDS
T07314
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
palz
Populus alba (white poplar)
Pathway
palz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118053034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118053034
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
118053034
mRNA cycle factors
Common to processing body (P body) and stress granule
118053034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
118053034
NCBI-ProteinID:
XP_034920051
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All DBs
Position
6:2845817..2852943
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AA seq
955 aa
AA seq
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MTVPMDNPVDLSSRDCVQRLYDKNVELGNRLRRSAQARIPSDFTVWQQMRENYEAIILED
HAFSEQHEIEYALWQLHYRRIEEFRTHCKAALGSNGSVTSQNGTMIARPERITKIRSQFK
TFLSEATGFYHDLMLKIRAKCGLPLVSFSDNSENQNIMSGEGNKATMMRKGLISCHRCLI
YLGDLSRYKGLYGEGDSKISDFSAASSYYKQASSLWPSSGNPHHQLGILATYSGDEFEAI
YCYFRSLAVDNPFSTARDNLIIEFEKNRQSFSQLCGDAKASLMKNATRQIGRRGRGRGSK
MSPLKDNKKDASALKKNTSSIPETLKAFKIRFVRLNGILFTRTSLETFVEVLSMVKSDLL
ELLSSGPKEEYNFDSSAEDNGLVIVRLISILIFTIHNVNREAKLESYADILQRSVLLQNA
FTAIFDLMGLIIKRCTQLNDPLASFLLPGVMTFLEWLACHPDFATGIEVEEHQAAARLFF
WENCISFLNNFMSNGTMPIDVDGEDACFSNMSSYDESETSNRLALWEDFELRGFLPLAPA
QLILDFSRKQSVTSDVGVKEKKACLQRILYAGKALVSLVRVGQQGMYFDSESKKFAIGAE
PQTAHSFEVAASLETSSLNVLGQKYPAVEKLSVEQTALYMDGEEEDEVIIFKPLMTDRHF
DVNALELSTFEVPSNASQGNMESCIGSVPVSCDSYYLSNGNNRSTVGPKSPASLAPLHFQ
ALQPTASKWPAKSEGSISNGLNNFNLVGNGLAMKSGLQEHQVVLQPSAVSLPLPIFVNPS
AGNLLPAKVSDTVVHSKSEPVMSSVSGFDSLSLKASSVFSASSRLNPVSRPVHHLGPPPG
FGSVPPKAKCEILSGIGQENYDLHMDDYSWLDGYQPPSSAKATVCNNSINHPEQSCHHMK
ANDGLKGTRMFPFPGKQLQTFPMKIENQNGWLNHQFPDHLKLYQEWQQQQLAKTG
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgacggttccgatggataatccagtggatctttcatcgcgggactgtgttcaacgtctt
tatgacaagaatgttgagttggggaataggcttcggaggtcagcccaagcaagaattcca
tcagattttactgtttggcaacagatgcgagagaattatgaggcaattatcctagaagat
catgctttctctgagcaacatgaaatagaatatgctttgtggcagttgcattaccggcgt
attgaggagtttcgaactcattgcaaagctgctctaggttcaaatggttcagttacatct
cagaatggaacaatgattgcaagacctgaacgaattacaaaaattcgttctcagtttaaa
acctttctgtctgaagcaactggattctaccatgatttaatgttgaaaatcagagcaaag
tgtggtcttcctttagtttctttttctgataattcggagaatcagaatattatgtctgga
gaaggaaataaagctaccatgatgaggaaaggcttgatttcctgccaccgttgtctgatt
taccttggtgacctttcacgttataaaggcttatatggtgaaggagactcaaaaataagt
gatttttcagccgcgtcaagttactataagcaagcttcttcattgtggccttcaagtggc
aaccctcaccatcagcttggaatattagctacttattcaggagatgaatttgaagcaata
tactgctactttaggagtctagccgttgacaaccccttctcaactgccagagataacttg
attattgaatttgagaagaatcgtcaaagtttttcccagctctgtggggatgccaaagct
tcattgatgaagaatgcaacaaggcaaatcggtaggagaggaagaggcagaggtagcaaa
atgtctcccttgaaagacaataaaaaagatgcaagtgctctaaagaaaaacacatccagt
attcccgaaactttaaaagctttcaaaattcgatttgtccgactaaatggcatcctattt
acacgaacaagtttggaaacttttgtagaggttctttcaatggtcaaaagtgacttgctt
gaacttctgtcatctgggccaaaagaagagtacaattttgattcaagcgccgaggataat
gggcttgtgattgttaggcttatatccattcttatattcacaatccataatgtgaatcgg
gaagctaagcttgagtcatatgctgacatcttgcaacgctcagttttgcttcagaatgct
tttactgccatctttgacttgatggggctcattattaagagatgcacacaactgaatgat
cctttggctagctttctgttgcctggagtgatgacatttttggagtggttagcctgtcat
ccagattttgctactggcatcgaagtggaagagcatcaagctgctgctagattgttcttt
tgggagaattgtatttcttttttgaacaacttcatgtcaaatgggaccatgcccattgat
gtggatggagaggatgcttgtttttccaacatgagcagctatgatgaaagtgaaacctcc
aacaggcttgcattgtgggaggactttgaattgagagggtttttgcctcttgctccagca
caattgattcttgatttttcaaggaagcaatctgtaacaagtgatgttggtgttaaggag
aaaaaggcatgtcttcagaggattctatatgctggaaaagctcttgtaagcctagttcgg
gttgggcagcaaggcatgtattttgactcagagtccaagaaatttgccattggtgctgag
cctcaaacagcccatagttttgaggtggctgcttctcttgaaacgtcttctttaaatgtt
ttggggcaaaaatatccagctgtggagaaattgagtgtggaacagactgcgttatacatg
gatggggaagaagaggacgaggtgattatttttaagccgttgatgactgataggcacttt
gatgtcaatgctcttgagttgtctacttttgaggttccaagtaatgcctctcaaggcaac
atggagagctgtataggatctgttcctgtctcttgtgattcttattatctgtcaaatggt
aacaatagaagcacagttggccctaaatctcctgcttctcttgcccccctgcattttcaa
gcattgcaacctaccgcttcaaaatggcctgccaaatctgaaggatccatttccaatggg
ttgaacaacttcaatttggtagggaatgggcttgctatgaagagtgggttgcaagaacac
caagtagttttgcagccttctgcagtttcacttcctcttccaatctttgtgaaccctagt
gctggtaacctgctacccgctaaggtttctgatactgtagtacactcaaaatctgagcca
gtcatgtcttctgtctctggttttgacagtctgtccttgaaggcatcatcagtgttctca
gctagttcaagattgaatccagtaagccgtcctgttcatcaccttggtcctccacctgga
tttggctctgttcctcctaaggccaaatgtgagatcttatctggcattggtcaggagaat
tatgatttgcatatggatgattatagctggcttgatggatatcagccaccgtcatcagca
aaagcaactgtgtgtaacaattctatcaatcaccctgaacaatcttgtcatcatatgaaa
gcgaatgatggcctgaaaggaacaagaatgtttccatttcctggcaagcaactccaaaca
tttcctatgaaaattgaaaaccagaatggctggttgaaccaccagtttcctgatcatctg
aaactataccaggagtggcaacagcagcaacttgcaaaaacaggctag
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