Populus alba (white poplar): 118053071
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Entry
118053071 CDS
T07314
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein isoform X2
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
palz
Populus alba (white poplar)
Pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118053071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
palz03041
]
118053071
Spliceosome [BR:
palz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
118053071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
ANAPC4_WD40
NBCH_WD40
Beta-prop_EIPR1
PRP4
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_Vps41
WD_LRWD1
eIF2A
Beta-prop_SCAP
PROPPIN
Beta-prop_Nup120_160
WD40_like
Beta-prop_WDR75_2nd
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
118053071
NCBI-ProteinID:
XP_034920111
LinkDB
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Position
6:complement(3400612..3404855)
Genome browser
AA seq
574 aa
AA seq
DB search
MAAEEENPALSNFSEESSAVVPDDELMIDNSSPIQPTPPIIPPVIPSSIPVLPSIAPIPI
VPPRPLAPLPIRPPATRPPGVQNGEMRTSDSDSDQEELSPTGTTPGSTGGYEISEASRLV
RERQQKAMQEFMMKKRAAALAVPTNDMAVRTRLRRLGEPITLFGEREMERRDRLRMLMAK
LDSEGQLEKLMKVHEEEEAASTAAAEDAEEEFVQYPFYTEGSKELLDARIDIAKYSISKA
ALRLQRARRKRDDPDEDEDAEIDWTLNQAESLSLNCSELGDDRPLSGCSFSCDGEMLATC
SLSGVAKIWSVPQVTKVSNLKGHMERATDVAFSPVHNHLATASADRTARLWNTDGSLLMK
FEGHLDRLARIAFHPSGKYLGTTSFDKTWRLWDIDSGVELLLQEGHSRSIYGIAFHHDGS
LAASCGLDALARVWDLRTGRSIMALEGHVKPLLGISFSPNGYHLATGGEDNTCRIWDLRK
KKSLYVIPAHSNLVSQVKFEPQEGYYLVTSSYDMTAKVWSGRDFKHVKTLSAHEAKVTSL
DISADGHLIATVSHDRTIKLWSSRSNEKDAMEVE
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgaagaggaaaatcccgctttgtcaaatttctcagaagaatcttctgctgta
gtccctgatgatgaactgatgattgataactctagtcctattcaaccaactccaccaatc
attccgccagtaatcccatcttcaataccagttttgccttctattgctccaatacctata
gttcctccccgcccattagcaccgctccccatccgaccgcctgcaactaggccacctgga
gtgcaaaatggcgagatgagaactagcgactcagattctgaccaagaggaattaagtccc
acagggactaccccggggtcaactgggggttatgaaatttcagaagccagcagactagtg
agagaacggcagcaaaaggcaatgcaggagtttatgatgaagaagcgtgctgctgctttg
gcagtgcctactaatgatatggcagttaggactcgtcttcgccggcttggtgaacctata
actctattcggagaacgagagatggagagacgggacaggttgaggatgcttatggctaag
ttggattctgaaggacaactggagaagttgatgaaagttcatgaggaagaggaggctgca
tctactgcggcagcagaagatgccgaggaagaatttgttcagtatccattctacactgaa
gggtcgaaagagctcctggatgctagaattgatattgctaaatactccatttcaaaggca
gctttgcgtcttcaacgtgcaaggagaaaaagagatgacccagatgaagatgaagatgca
gagattgattggactctgaatcaggcggagagtttgagtcttaattgcagtgagcttgga
gatgaccggccactctctggctgttccttctcttgtgatggagaaatgctcgctacctgt
tccttaagtggagttgctaaaatatggagcgtgcctcaagttacaaaggtttctaactta
aagggacacatggaacgtgcaactgatgtcgccttctctcctgtgcacaatcatttggca
actgcctccgctgatcgaactgcaaggttgtggaacactgatggttctctcctgatgaag
tttgaaggtcatctagaccgtcttgctcgcattgctttccatccatcagggaagtacttg
ggcaccacgagctttgataagacatggagactgtgggatatagattctggtgtggagctg
ctccttcaagaaggtcacagtcggagcatttatggaatagctttccatcatgatggatca
ttagcagcatcctgtggattggatgcgctagcacgtgtttgggacctacgtactgggaga
agtataatggcattggaaggccatgtcaagccgcttcttgggatcagcttttcacccaat
ggctatcatttagcgactggcggagaggataatacttgccggatatgggatttaaggaag
aaaaaatcattgtatgtcataccagcacactcaaatcttgtatcacaagtaaagtttgag
ccccaagaaggctattatctggttacatcatcatatgacatgactgctaaggtttggtct
ggccgagattttaagcatgtcaagacattatcagctcacgaagccaaagttacatcgctg
gatattagtgcagatggacatctaattgcgactgtctcacatgatcgaaccatcaagctg
tggtccagcagaagcaatgaaaaggatgctatggaggttgaatga
DBGET
integrated database retrieval system
