Populus alba (white poplar): 118054581
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Entry
118054581 CDS
T07314
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118054581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118054581
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118054581
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118054581
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
118054581
NCBI-ProteinID:
XP_034922107
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All DBs
Position
3:complement(20110252..20111178)
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AA seq
308 aa
AA seq
DB search
MALKMKSSTPVQVREVWAENLVAEFSLIKEAISRFSFVSLDTEFPGTLFLSNLDKSLLSQ
APPSHNYRLMKYNVDLLKIIQLGMTLSDSQGNLPSFGTEFHYVWQFNFRDFNIEHDPYND
ESIGLLERQGIDLKKNREKGIDSSDFAWMVFTSGLVFNNCSITWITFHGAYDVGFLIKIL
TRRELPCDMASFLGMVSFFFGVRVYDTKFMMGSIGGLRGGLERVATLLGVERTTGKRHRA
GSDSLLTHQTFVRFKDSCANLDLENLNGCEGMIFGLCEGWLGFDRTPEVYNIETSTQLKP
QFNEVFSV
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atggcgttaaagatgaagagcagcacaccggtacaggtgcgcgaagtctgggcagagaac
cttgtagctgagttttctctaatcaaggaagcaatctctcgcttctccttcgtttcactg
gacactgaattccctggtactctctttctgtcaaatcttgacaagagtttgctgtctcaa
gcccctccttctcacaattaccgtctcatgaagtacaatgttgatctcttgaaaataatt
caacttgggatgaccctgtctgattcacaaggaaatcttccaagtttcggaacagaattc
cactacgtttggcagtttaatttccgggatttcaacatcgaacatgatccttacaacgac
gaatctattgggttacttgaacgccaaggtattgatctcaagaagaacagagaaaagggt
atcgattcctcagattttgcatggatggtttttacttctggacttgttttcaataactgt
tcaataacttggattacttttcatggtgcttatgatgttgggttcttgatcaagatctta
actcgacgagagttgccatgtgacatggcgtcttttctggggatggttagtttcttcttt
ggggttcgagtttatgatacaaaattcatgatgggatctatcggtggtttgcgcggtgga
ttggagagggtggctacgttactgggtgtagaacggacaaccggaaaaaggcaccgggca
ggatctgatagcctgttaacccatcaaacattcgtgagatttaaggattcttgcgctaat
cttgatcttgaaaacttgaatggctgtgagggaatgatttttggactatgtgaaggctgg
ctgggattcgatcgtacacctgaagtatacaatattgaaacttctactcagttgaaacct
cagtttaatgaagtgttttcagtgtaa
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