Populus alba (white poplar): 118054697
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Entry
118054697 CDS
T07314
Name
(RefSeq) ubiquitin receptor RAD23b
KO
K10839
UV excision repair protein RAD23
Organism
palz
Populus alba (white poplar)
Pathway
palz03420
Nucleotide excision repair
palz04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
118054697
09124 Replication and repair
03420 Nucleotide excision repair
118054697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
palz03051
]
118054697
03400 DNA repair and recombination proteins [BR:
palz03400
]
118054697
Proteasome [BR:
palz03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
118054697
DNA repair and recombination proteins [BR:
palz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
118054697
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
CUE
UBA_3
TECR_N
Dsc3_N
Med13_C
MmeI_C
UBA_RAD5A
Motif
Other DBs
NCBI-GeneID:
118054697
NCBI-ProteinID:
XP_034922258
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Position
3:complement(20125874..20131184)
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AA seq
372 aa
AA seq
DB search
MKLTVKTLKGSHFEIKVHPTDTIMGVKKNIEDAQGKDNYPCGQQLLIHNGKVLKDETTLA
DNKVTEDGFLVVMLSKSKTGTAGTSSTQPVSTPPTTTPTSISTPAPDAQALDSKSASASD
SETANAQSDTYGQAASNLVAGSNLEQTVQQIMDMGGGTWDKETVTRALRAAYNNPERAVD
YLYSGIPETAEVAVPVARFPADQATETGAAPAAPAPAFGAPNSSPLNMFPETISGGGGAA
GGGLGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQNPQLLRIIQEHHAEFLQLIN
EPLDGSEGDIFDQPDQDMPHAINVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEQLAA
NYLLENAGDFED
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaccgtcaagactctgaaaggcagccatttcgaaattaaggttcatcccacc
gacactattatgggcgtaaagaagaatattgaagatgcgcaaggaaaagacaattaccca
tgtggacaacaattgttgattcataatgggaaagtattgaaagatgagactactttagct
gacaacaaggttactgaagatggttttcttgttgtcatgcttagcaagagtaaaacaggc
acagctggtacttcatccacccagcctgtttctactccacctaccaccacaccaacttca
atttcgactcccgcacctgatgctcaagcattggactcaaagagtgcatctgcttctgac
tcagaaacagccaatgcacagagtgatacttatggtcaagctgcttccaatttagttgct
ggtagtaatttggagcagactgttcagcaaataatggatatgggaggtggaacctgggat
aaagaaacagttactcgtgcacttcgagctgcctataataacccagagcgggcagtggat
tacttgtattcgggcattccagaaacagcggaagttgctgtcccagtggccaggtttcct
gcagatcaggctactgaaacaggtgcagctccagctgcccctgcacctgcatttggagca
cctaattcatctccattgaatatgtttcctgagacaatttctggtggtggaggtgctgct
ggtggcggacttggctctcttgatttccttagaaacaatcaacaatttcaagcattgcgt
tcaatggttcaagcaaatccacaaatcttgcagcccatgcttcaggagcttgggaagcaa
aacccccagcttttgagaatcattcaagagcatcatgcagagtttcttcagttaataaat
gaacctcttgatggttctgaaggggatatatttgatcagcctgaccaagatatgccccat
gcaatcaatgtgaccccagctgaacaagaggctattgaacggctcgaggcaatgggtttt
gatagagcccttgtcatagaagcattcttggcttgtgatcgcaacgagcaactggcagcc
aactatctattggaaaatgctggagattttgaagattga
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