Populus alba (white poplar): 118055539
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Entry
118055539 CDS
T07314
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
palz
Populus alba (white poplar)
Pathway
palz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118055539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118055539
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
118055539
mRNA cycle factors
Common to processing body (P body) and stress granule
118055539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
118055539
NCBI-ProteinID:
XP_034923352
LinkDB
All DBs
Position
1:31962718..31968377
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AA seq
972 aa
AA seq
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MIVQMDKMSAPLPRERAQRLYEKNLELENKRRRSAQARVPSDPNSWQQMRENYEAIILED
HGFSEQHNIEYSLWQLHYRRIEELRSHYSAVLASTGSNAPPGPKVPARPDRINKIRLQFK
TFLSEATGFYHDLILKIRAKYGLPLGYFSEDSDNRAVTETDVKKGLVSCHRCLIYLGDLA
RYKGLYGDGDSKTREYAAASSYYLQAASLWPSSGNPHHQLAILASYSGDELVAVYRYFRS
LAVDNPFATARDNLIVAFEKNRLSYSQLLGDAKVSGVKDSPVRVTGKGRGKGEANPASKD
MKLEAGAVKEKTSNIREMYKSFCVRFVRLNGILFTRTSMETFSEVLALVSMGFSELLSSG
PEEELNFGADASENGLFIVRLISILIFTVHHVKKEAEGQTYAEIVQRAVLLQNAFTSVFE
FMGHILDRCAQLHDPSSSYLLPGIMVFVEWLACCPDIASGSDIDEKQSAVRLNFWNHCIS
FLNKIVSCCSMSLDDNEDEMCFFNMSRYEEGETENRLALWEDFELRGFSPLLPAHTILDF
SRKHMFGSDGSKEKIARAKRILAAGKALANMVRVDQQTIYFDSKMKKFVIGAEPQISDDG
LLRAADVIQEMQPEETMNLVALQPNPHPYTEGEEEDEVIVFKPVVTEKRNDVLSPKWAPH
EGLKPSRNAADDLHFYGSSVSAPLDNLRQQAAFDAGSQISVSHGTIVPPHLQLIQPHTSK
WLVEEAASLANGLKGVRFMENGHVMEHEMQKDLGMAYPAVRPVSVQQSLNVNTGMFYGQT
KVAETAVPSKVDTYAPSGVVAESLAVKTSAALPPGFRKSPVSRPLRHLGPPPGFNSVPPK
QASEPVSGSVLMAENPLQDDYSWLDGYQLPSSAKVSGLNGSANVISHAAPQYTSNSNGLS
GTASFPFPGKQVPPVQTQAEKQKGWQNYLGFEQQRVQQEHQLQQQLINGNQQFSPIPEQY
HGQSIWGGRYIV
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgattgtgcagatggataaaatgtctgctcctttaccacgggagcgagcccaacgcctg
tatgagaagaaccttgagttggagaataagcgccggaggtcagctcaggctcgagttcca
tctgatcccaattcatggcaacagatgcgtgagaactatgaagcgataattcttgaggac
catggtttttctgagcagcacaatatagaatattctctgtggcaattgcattataggcgc
atagaggaactaagatctcactatagtgctgttttagcttctactggctcaaatgcacct
ccaggtccgaaagttcctgcacgacctgatcgaatcaacaagataaggcttcaatttaaa
acattcctttcagaagcaactggattttatcacgatctgattctgaagatcagagcaaag
tatgggcttcctctgggttatttttctgaggattcagataatcgagctgttacggagact
gatgttaagaaaggtttggtctcttgtcaccgttgtttgatatacttgggtgacctggct
aggtataaaggactatatggggatggtgactccaaaacgcgtgagtatgcagcagcttca
agttactacttgcaagctgcatctctgtggccatcaagcgggaacccccatcaccagctt
gccattttggcttcctattcaggggatgagttggtggctgtgtatcgctattttaggagt
ctggcagtggataatccctttgcaactgcaagagataacttgattgttgcttttgagaag
aatcgtcttagctactctcagctgcttggggatgcgaaagtctctggtgtcaaggattca
cctgtgcgcgtgactggcaaaggtagaggaaagggagaagcaaaccctgcatctaaggat
atgaaactggaagcaggtgctgtcaaggaaaagacatctaatattcgtgagatgtacaag
tccttctgtgttcggtttgtccgactgaatggcattcttttcacacgcactagcatggag
acattttcggaagttctggcactggttagcatgggattctcagagcttctttcttctgga
ccagaagaggagctgaattttggtgcagatgcttctgaaaatggactttttattgttcgc
ctcatctccattcttatatttactgttcaccatgtgaagaaggaggctgaaggtcagaca
tatgcagaaatcgtgcagcgtgctgttctgcttcagaatgcctttacttctgtttttgag
ttcatgggacacatattagataggtgtgcacagcttcatgatccctcttcaagttaccta
ttacctggcattatggtttttgtagaatggttggcttgttgtcctgacatagcatcaggc
agtgacatagatgagaaacagtcagctgtaagattgaacttttggaatcactgcatatca
tttttgaacaagattgtttcatgttgctcaatgtctcttgatgacaatgaagacgagatg
tgcttctttaacatgagccgttatgaagaaggagaaacagaaaaccggcttgctttgtgg
gaagactttgagttgagagggttttcaccacttcttcctgctcatactattttagacttt
tcaaggaagcacatgtttggaagcgatggcagtaaggaaaaaatagctcgtgctaaaagg
attctagcagcagggaaggccttagcaaatatggttagggtcgatcagcaaacaatatat
tttgattcaaagatgaaaaaatttgttattggtgctgagcctcaaatttcagatgatggg
ttgttgagagctgctgatgtgattcaagaaatgcagcctgaagaaacaatgaatttggta
gctttgcagcctaatccacacccatacactgaaggtgaagaggaagatgaagtgattgtt
ttcaagccagtagtgactgagaagagaaatgatgtgcttagtccaaaatgggcccctcat
gaaggtctgaaacctagtcgaaatgcagcagatgatttgcacttttatggcagttctgtt
tcagcccctcttgataatcttcggcagcaggctgcttttgatgcaggttctcagatatct
gtatctcatggtactattgtccctccgcatctccaacttatccagcctcatacttcaaag
tggttagttgaagaagctgcttctcttgccaatggcttgaaaggtgtcaggttcatggaa
aatgggcatgtcatggaacatgagatgcagaaagatttaggcatggcctatcctgctgtt
cgtccagtttctgtccaacaatctctgaatgtaaatactggtatgttttatggtcagaca
aaagtggcagaaactgctgttccatcaaaggttgatacttatgcaccttctggggttgtt
gctgaaagtttggctgtgaagacatcggcagctttgccaccaggtttcagaaaaagtcca
gttagccgacctctaaggcaccttgggcctcccccaggttttaattctgttcctcctaag
caagcgagtgaaccagtttctggttcagttttgatggctgagaatccactgcaggatgat
tatagctggttggatggctatcagctgccatcatcagcaaaagtctctgggctcaatggt
tctgctaatgtcatttctcatgcagcaccacagtacacaagtaacagcaatggcttgagt
gggacagccagctttcccttcccagggaaacaggtaccgccagtgcaaacccaagcagag
aaacagaaaggctggcagaactatctgggttttgagcaacaacgagtacagcaagaacac
cagctgcagcaacaactcattaatggaaaccagcagttttctccaattcctgagcaatat
catggacagtccatctggggtggtcgttatattgtgtga
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