KEGG   Populus alba (white poplar): 118055613
Entry
118055613         CDS       T07314                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
palz  Populus alba (white poplar)
Pathway
palz03018  RNA degradation
palz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:palz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    118055613
  09123 Folding, sorting and degradation
   03018 RNA degradation
    118055613
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:palz03019]
    118055613
   03041 Spliceosome [BR:palz03041]
    118055613
Messenger RNA biogenesis [BR:palz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     118055613
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     118055613
Spliceosome [BR:palz03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    118055613
SSDB
Motif
Pfam: LSM RVT_2
Other DBs
NCBI-GeneID: 118055613
NCBI-ProteinID: XP_034923460
LinkDB
Position
1:complement(32246509..32248871)
AA seq 98 aa
MSIGTGLESLVDQTISIITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNIGVVGELDEELDAHLDLSSLRAHPLKPVIH
NT seq 297 nt   +upstreamnt  +downstreamnt
atgtctattggaacgggactcgagtctctcgtagatcaaacaatttcaattatcacaaat
gatggccggaatatagtgggagtcttaaaaggctttgaccaggccacaaatattatcctt
gatgaatctcacgagcgtgtttactccaccaaggaaggtgttcaacaactagtgttgggc
ttgtacataataaggggtgacaacataggcgttgttggggaacttgatgaagagcttgat
gcgcaccttgacttgtctagtctgagagctcatccactcaagcctgtcattcattga

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