Populus alba (white poplar): 118055613
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Entry
118055613 CDS
T07314
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118055613
09123 Folding, sorting and degradation
03018 RNA degradation
118055613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118055613
03041 Spliceosome [BR:
palz03041
]
118055613
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118055613
mRNA degradation factors
5'-3' decay
Lsm complex
118055613
Spliceosome [BR:
palz03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
118055613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
RVT_2
Motif
Other DBs
NCBI-GeneID:
118055613
NCBI-ProteinID:
XP_034923460
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Position
1:complement(32246509..32248871)
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AA seq
98 aa
AA seq
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MSIGTGLESLVDQTISIITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNIGVVGELDEELDAHLDLSSLRAHPLKPVIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtctattggaacgggactcgagtctctcgtagatcaaacaatttcaattatcacaaat
gatggccggaatatagtgggagtcttaaaaggctttgaccaggccacaaatattatcctt
gatgaatctcacgagcgtgtttactccaccaaggaaggtgttcaacaactagtgttgggc
ttgtacataataaggggtgacaacataggcgttgttggggaacttgatgaagagcttgat
gcgcaccttgacttgtctagtctgagagctcatccactcaagcctgtcattcattga
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