Populus alba (white poplar): 118055986
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Entry
118055986 CDS
T07314
Name
(RefSeq) ubiquitin receptor RAD23d isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
palz
Populus alba (white poplar)
Pathway
palz03420
Nucleotide excision repair
palz04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
118055986
09124 Replication and repair
03420 Nucleotide excision repair
118055986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
palz03051
]
118055986
03400 DNA repair and recombination proteins [BR:
palz03400
]
118055986
Proteasome [BR:
palz03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
118055986
DNA repair and recombination proteins [BR:
palz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
118055986
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
Rad60-SLD
UBA_7
CUE
TECR_N
Rad60-SLD_2
UBA_RAD5A
Crinkler
Ubiquitin_4
Dsc3_N
UBA_3
Ubiquitin_2
Motif
Other DBs
NCBI-GeneID:
118055986
NCBI-ProteinID:
XP_034923932
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Position
4:9311108..9321545
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AA seq
386 aa
AA seq
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MKVFVKTLKGTNFEIEVKPEDTVADVKKNIESVQGGDVYPAAQQMLVYQGKVLKDDTTLD
ENKVSESSFFVVMLNKSKVSSGGPSTTPTAPPSQAPPASSLPSNVTQPSITSQAPEPAAA
LPQSAAESSPAVVTSAPTLDTNMYGRAASNLAAGSNLEATIQGILDMGGGDWDRETVVRA
LRAAFNNPERAVEYLYSGIPEQAEVPPVAQGVQGPASGNAANPPALAPQSAVAPSSGPNA
NPLDLFPQGHNSTGSNAGTGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPYLM
RLIQEHQADFLRLINEPVEGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFERAIVL
EVYFACNKNEELAANYLLDHMHEFDE
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtttttgtaaagactttgaagggtaccaacttcgagatcgaagttaaacctgaa
gatacggtggctgatgttaagaaaaacatagagagtgtacagggaggggatgtttatcca
gcggcgcaacagatgctagtttatcaagggaaagtacttaaggatgatacaacattggat
gaaaataaagtttctgaaagtagtttttttgttgttatgttaaacaagagtaaggtttca
tcgggcggaccctcaactacaccaactgcaccaccaagccaagccccacctgcaagttcc
ttgccttctaatgtgacacaaccatcaataacatctcaagctcctgaaccagctgctgct
ttgccacaatctgctgctgaatccagtcctgctgtagttacttcagctcccactttagat
acaaacatgtatgggcgagcagcatcaaatctcgctgcaggaagtaatttagaagcaacc
attcaagggattcttgatatgggtggaggagactgggaccgagaaacagttgttcgtgct
ctacgtgctgcattcaacaaccctgaacgagctgttgaatatttatactctggtattcca
gagcaagctgaagttccaccagttgcccaaggtgtccaaggtccagcaagtggcaacgct
gcgaatcctccagctctggctccacaatcagctgtggctcctagtagcggtccaaatgca
aatccactagatctctttccacagggccataacagtacgggttctaatgctggtacaggc
aacttggattttttacgcaatagccaacagttccaagccttgcgagctatggtgcaagcg
aaccctcaaatcctacagccgatgcttcaggagctagggaagcaaaatccatacctgatg
cgtctcattcaagagcatcaggctgacttcttgcgcttgataaatgaacctgttgaagga
gaggggaatgtgctgggccaattggcctctgcaatgccacaagcagtgactgtcacccct
gaggagcgtgaggcaattgaacgtcttgaagcaatgggctttgaacgagccatagtattg
gaggtgtactttgcatgcaacaagaatgaagaactggcggccaactatctattagaccac
atgcatgaattcgacgaatga
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