Populus alba (white poplar): 118056220
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Entry
118056220 CDS
T07314
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
palz
Populus alba (white poplar)
Pathway
palz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
118056220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118056220
04121 Ubiquitin system [BR:
palz04121
]
118056220
03036 Chromosome and associated proteins [BR:
palz03036
]
118056220
03400 DNA repair and recombination proteins [BR:
palz03400
]
118056220
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
118056220
Ubiquitin system [BR:
palz04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
118056220
Chromosome and associated proteins [BR:
palz03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
118056220
DNA repair and recombination proteins [BR:
palz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
118056220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
zf-C3HC4_2
zf-C3HC4
BRCT_2
zf-C3HC4_3
zf-RING_2
zf-HC5HC2H_2
zf-RING_UBOX
zf-RING_5
zf-RING_6
RTT107_BRCT_5
zf-C3HC4_4
Prok-RING_4
zf-RING_10
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
118056220
NCBI-ProteinID:
XP_034924265
LinkDB
All DBs
Position
2:13898068..13903597
Genome browser
AA seq
729 aa
AA seq
DB search
MAGSVKQSVSSMNPWVLHLQKLGLELKCPLCLELLKRPFLLPCDHIFCNSCLPKTLQFGS
ECPLCKAQYGDSDLRCLPLIENMVTIYRSLDAAFNASILQSRSETGRVLKQCPASKSSDS
KDMKLLEAHWGNNSSSGQSKLMNNDVACAPSNCSGGKGVRKNVAMGNCNVPMHVKDKEYG
VIGSVGGASNDKQNANSPPVDSQVRARGLHESKAFQMDLNQADQLSPRSPPSFGDNKDSE
NDSNDQGGDDSLQNYKAENLVQLNSDNKRRQERHNTSASETEEGHLRDSKRPKKLNYSPS
DLGANNIGHIKPNAPPTENLITSSQLEIPAKSNNSFNACRFCHSSRITAVTGPMLHFVNG
KPVEGVEATPSNTIHVHAVCIEWAPQVYYVGETVKNLNAELARGAKLKCSKCGLKGAALG
CYLKSCKRSYHAPCAMEITKCRWDYENFLVLCSAHSSVKFPSEKSKAKKHNQKTSSVLTS
VAPQQSNFWAGSCNGAKKWVFCGSALSSEEKYLLVKFGSMIDVPVSKFWASNVTHVIAAT
DSDGACTRTLKYLMAILNGKWVLTIDWIKACMESMHPVDEENYEIILDSQGSRDGPKNGR
LSALNNAPKLFSGLSFCFVGDFVAGYKEGLQSLVIAAGGTLLKSEEELVEQRHDLLSPST
TLIVYNLDPPQGCKLDEEVSVIWQRTNEAQDLAAKVGSQVIGHTWLLESISSYKLQPFVN
WESISNSDS
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggcaggctcagtgaaacagagcgttagctctatgaacccatgggttcttcatctccag
aaattgggtctcgagctcaaatgccctctctgcttggagttgttgaagcgaccctttttg
ctaccttgtgatcacattttctgcaattcatgtttgcccaaaacgttacagtttggatcc
gagtgtcctctctgtaaagctcaatatggcgactcagatttgaggtgtttgcctttgatt
gaaaacatggtgacaatctatagaagcttggatgcagctttcaatgccagtattttgcag
tctcgttctgagactggtagagttttgaagcagtgtccggcttcgaagagtagtgatagt
aaggatatgaaattattggaagctcactgggggaataattctagtagtggacaatctaaa
ttaatgaacaatgatgtagcttgtgctccgtcgaattgttcaggtggaaaaggggttcga
aagaatgtagcgatgggtaattgcaatgtgccaatgcatgttaaggataaagagtatgga
gtgattggtagtgtagggggtgcgtctaatgataaacagaatgccaattctccaccggta
gattcgcaggtaagagctagggggcttcatgaatccaaggcttttcaaatggacttgaat
caggcagatcagttgtcgcctagaagtcctccttcatttggtgataataaggattcagaa
aacgacagtaatgatcagggaggtgatgatagtctacaaaattataaagcagaaaacttg
gttcaactgaattctgacaacaaaagaagacaagagaggcataacacttctgcttctgaa
accgaggaaggtcatttgagggattcaaagagacctaagaagttgaactacagcccatcg
gatctgggtgcaaataatattggtcatatcaaaccaaatgcacctccaactgaaaatttg
ataaccagttctcaattagagattcctgcaaaatcgaataactcgtttaatgcttgtaga
ttctgccactcctccagaatcacagcggttactggtccaatgttgcattttgtgaatgga
aagccagtagagggagttgaagcaactccatccaacactatacatgtgcatgctgtgtgt
attgaatgggcaccgcaagtctattatgttggtgaaactgttaagaatctgaatgcagaa
ctggccaggggtgcaaagcttaagtgcagcaaatgtgggctgaagggagcagctttaggc
tgctatctaaaatcatgcaagagaagttatcatgctccctgtgcaatggaaattactaaa
tgtcgatgggattatgaaaacttccttgtgctttgctctgctcattcttcagtaaaattt
ccaagtgagaagtccaaggctaagaaacacaaccagaaaacttcttctgtgctgacttca
gttgccccacaacaatctaacttttgggcgggatcgtgtaatggagcaaagaaatgggtt
ttctgtggatctgctctgtcttctgaggaaaagtatcttttggtgaagtttggaagcatg
attgatgtgccggtgagcaaattctgggcatcaaatgtcacacatgtgattgcagccaca
gattcagatggggcatgcaccaggacgctgaaatatcttatggccattttgaatgggaaa
tgggttcttacaatagattggataaaggcttgcatggaatctatgcatcctgtggatgaa
gaaaattatgaaattattctagacagccaaggaagccgtgatggcccaaaaaatggcagg
cttagtgcactaaataatgcaccgaaacttttcagtggcttaagtttctgttttgttgga
gattttgtggctggctacaaggaaggtctccagagtctggttattgcggcaggaggtaca
cttttgaagagtgaggaagaattggtggaacaaagacatgacctgttatctccttcaaca
acactaattgtttataaccttgatcccccacaagggtgcaaattagacgaggaagtttca
gttatctggcagagaaccaatgaagcacaggatttagctgctaaagttggatcccaagtc
attggtcacacatggctgttggaatctatctcctcgtacaagttacagccttttgtaaac
tgggaaagcatcagcaattctgatagctag
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