Populus alba (white poplar): 118056722
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Entry
118056722 CDS
T07314
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118056722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118056722
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118056722
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118056722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
DUF5646
Motif
Other DBs
NCBI-GeneID:
118056722
NCBI-ProteinID:
XP_034924925
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All DBs
Position
19:9362031..9375309
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AA seq
902 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKTIEKEMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDAFEAEIEGLTVKKGKTRPPRLTHLETSITRHKL
HIKKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDDFSDVDELYNSLPLDNLES
LEDLVIIGPPGLVKGAPVQVLKTSLAITAPQAPQTPATAASPPHQSVVGQEQADDTASQD
SNSDIVARTPAKSGMVGSSAASTPTGNHAPISVNVQVQTLPSLLAVSPTLPGSSSVRGVL
ENAAPANPSHVTLTNAANSAKDEEIAGFPGHRSSPPSLVDTGLARGIGRGGLSSQPSSSI
SLSPGVIPSNGALGSVPSASDIAKRNVLGTDDRLGSGGMVQPSASPLSNRMILPHASKAS
DGTSAVDSSNAGDAATLSGRVFSPLVTGMQWRPGSSFQSQNEPGQFRARTEIAPDQREKF
LQRLQQVQQQGHSNILGMPPLAGGNHKQFPTQQNPLLQQFNSQSSSVSQGSLGIGVQAAG
FNAVTSAALQQPNSIHQQSSQQVVMSSGVKDAEVVHPSVEEQQLKQNLPEDSTTESAPTS
GLGKGLVIEDELTASYAMDTSLQAGASGSLTEPVQVPRDIDLSPGQPLQSSQPSSSLGVI
GRRSISDLGAIGDNINGSAINAGAMHNQSYNFEMLDAAFHKLPQPKDSERARSYIPRHPA
TTPPSYPQVQAPMASNPAFWERLSMDSVGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRY
HRKYNTWFQRHEEPKVTTDEYEQGTYVYFDFHVGNEDKQGWCQRIKTEFTFQYNYLEDEL
IV
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atgggagcaagtcgcaagctacaaggcgagatcgatcgcgttctcaagaaagttcaagaa
ggcgtcgacgtttttgacagtatctggaacaaggtttatgatacagataatgcgaatcaa
aaggagaagtttgaggcagacttgaagaaggaaatcaagaaactgcagagatatagggac
caaatcaagacatggattcaatccagtgagatcaaggataagaaggttagtgcatcttac
gagcaggctctggtggatgctcgtaagactattgagaaagaaatggaaagatttaagata
tgcgagaaggaaacaaagacaaaagcattttccaaagaaggtttgggccaacaacccaaa
actgatccaaaggagaaagctaaatcagaaacaagggattggttgaataatgtggttggg
gaactggaatctcagattgatgcctttgaagctgagattgaggggctcactgtcaagaaa
ggaaagacaaggccacccagattgacacatttagagacatccatcacacggcacaaactt
catataaagaaattagagttgatcttgaggctactagacaatgatgaattgagtcccgag
caagttaatgatgttaaagatttcctggatgactatgtggaacgtaatcaggaagatttt
gatgattttagtgatgttgatgagttgtacaactcattaccattagacaacttggagtct
cttgaagacctggttataattggtcctcctggtcttgtgaagggtgctcctgttcaagtc
ttaaagacttctttggcaataacggctccccaggctcctcaaacacctgccactgctgct
tctccgcctcatcaaagtgttgttggtcaagagcaagccgatgatactgcttcacaagat
agtaattctgatattgttgctagaactcctgccaaaagtggtatggttggttcttcagct
gcatcaacaccaactgggaaccatgcacctatttctgtgaatgttcaggttcagacattg
cctagtctgttagcagtttctccaactcttcctggttcatcttctgttcgaggtgttttg
gaaaatgctgctcctgctaatccttctcatgtaaccctgaccaatgctgccaattctgca
aaggatgaagaaattgcaggcttccctggccatagatcatcaccaccttctcttgttgat
actggactagcaaggggcattggtagaggtggcctctctagccagccctcatctagtatc
tccctcagtcctggtgtaattccgagcaatggagctcttggttcagtaccttcagcttct
gacattgcaaagagaaatgttttgggaactgacgatagacttgggagtggtggaatggtg
cagccctcggcttctccactaagtaaccgaatgatcttgcctcatgctagcaaggcaagt
gatggaactagtgcagttgattctagtaatgctggtgatgctgctactctgagtggcaga
gttttctctcctttggtcactggcatgcaatggagacctggaagttcctttcaaagtcag
aatgaaccgggccaatttcgtgcaagaactgaaatagctcctgatcagagagagaaattc
ttgcagcgtcttcagcaagtccagcaacaaggtcacagtaacattcttggcatgccacct
cttgccggtgggaatcataagcagtttcccacccaacaaaacccacttttgcagcagttt
aattctcaaagttcatccgtctctcaaggtagtttgggaatcggagttcaggcagcaggt
ttcaatgctgttacatctgctgccttacagcagcctaattctatccatcagcagtctagt
cagcaagttgtgatgtctagcggtgtgaaagatgcagaggttgttcatccatcagttgag
gagcagcagctaaagcagaatttacctgaggattcaaccactgaatctgcccctacatct
gggcttggcaaaggtcttgtgattgaggatgaactcacagcttcatatgcaatggatact
tctctgcaggctggagcatctggttccttgacagagcctgtacaagtgccaagagatata
gatctctctccagggcaacccctacaatccagtcaaccatctagcagcctaggtgttatt
ggccggagaagcatctctgaccttggtgccattggtgataatatcaatggttctgctata
aatgctggggcaatgcataatcagtcatacaattttgagatgcttgatgctgcatttcac
aagcttcctcaaccgaaagactcagaacgagctaggagctatattccaaggcaccctgca
acaacaccccctagctatcctcaagttcaggcaccaatggcaagtaatcctgcattctgg
gaacggttaagcatggatagtgttggcactgacaccttgttctttgctttttactatcaa
cagaatacatatcagcaatatctggctgcaaaagaactgaagaagcaatcttggagatac
cacagaaaatacaacacctggtttcaacggcatgaggagccaaaagttactactgatgaa
tatgaacaggggacgtatgtgtattttgatttccatgttggcaatgaggacaaacaagga
tggtgtcaaagaatcaagacagagttcacttttcagtataactatcttgaagatgaactc
attgtctag
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