Populus alba (white poplar): 118056811
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Entry
118056811 CDS
T07314
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 6-like
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
palz
Populus alba (white poplar)
Pathway
palz03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118056811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palz03021
]
118056811
03036 Chromosome and associated proteins [BR:
palz03036
]
118056811
Transcription machinery [BR:
palz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
118056811
Coactivators
SAGA/TFTC/STAGA complex
118056811
Chromosome and associated proteins [BR:
palz03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
118056811
STAGA complex
118056811
TFTC complex
118056811
SAGA complex
118056811
SLIK complex
118056811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
TFIID-31kDa
Histone
TAF4
Motif
Other DBs
NCBI-GeneID:
118056811
NCBI-ProteinID:
XP_034925063
LinkDB
All DBs
Position
1:40580503..40585851
Genome browser
AA seq
547 aa
AA seq
DB search
MSSSIVAKEAIEVIAQSIGITNLSPDVSLTLAPDVEYRLREIIQEAIKCMRHSRRTALTA
HDVDTALILRNVEPIYGFGSGGDKAPLRFKRAAAAGHKDLYYIDDKDVNFKHVIEAPLPK
PPLDTSLSSHWLAIEGVQPAIPENVPIEALGVISDGKKSDYKDDGLSIDVKLPVKDILSR
ELQLYFEKVTELTKRRSESAIFKQALVSLATDSGLHPLVPYFIQFIADEVSRNLNNFSLL
FAVMRIARSLLQNPYIHIEPYLHQLMPSIITCLVAKRLGNRFSDNHWELRNFTANLVASI
CKRFGHAYHNLQPRIMRTLVHAFLDPTKSLPQHYGSIQGLAALGPGVVRLLILPNLEPYL
LLLEQEMLLEKQKKEIKRHEAWQVYGALTRAAGLCMYDRLKMLPGLLIPPSLAIWKSNGR
VMTSMPNKRKASTDHLMQQPPLKKIAADSAIGAMPKNSMPVEMQGAASGFPTAVGASSVS
VSAISRQLSNENVPRREISGRGLKTSTVLAQAWKEDMDAGHLLASLFELFSESMFSFTPK
PELSFFL
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcagcatagtagcaaaggaagcaatagaggtgatagcacagagcatcggaatc
acgaatttgtccccagatgtttccctcactctggctcccgacgtggagtaccgtctccgg
gagatcatccaggaggcaattaaatgcatgcgtcactcaaggagaactgccttgactgct
catgatgttgacactgctctcatcttaagaaatgtcgagccaatttatggttttggttct
ggaggagataaagctccattgcggttcaaaagagctgctgctgctggacataaggatcta
tattatatcgatgacaaagacgtcaattttaaacatgtgattgaagcccctctgccaaaa
cccccgcttgatacttctctttcctcacattggttagctattgaaggtgttcagcctgca
attcccgagaatgttccgattgaagcacttggagtaatctctgatggcaaaaaatctgac
tacaaggatgatggtctttcgatcgatgtcaaactacctgtcaaggacatattgtcaagg
gagcttcagctttactttgaaaaggtcacagagcttactaagaggaggtctgaatctgct
atcttcaaacaagcattagtgagcttggccacagactcaggactgcatcctttagttcct
tatttcatacagttcattgctgacgaggtttcacggaatctgaataatttttctcttctc
tttgctgtgatgcgcattgcccgaagccttcttcaaaacccatacattcatattgaacct
tatctacaccaattaatgccgtctattattacctgcctagttgcaaaaagattaggtaac
agattttctgacaaccattgggaactcagaaacttcacagcaaacctggttgcttcaata
tgcaaaagatttgggcatgcttatcacaatctgcagcctcgcatcatgaggactctagtc
catgcattcttggacccgacaaaatcattgccacaacattatggttcaatacaaggatta
gcagctctaggacccggtgtggttcgtcttcttatactaccaaatctagagccgtattta
ctcctccttgaacaagaaatgctgcttgagaagcaaaaaaaagagataaagagacatgaa
gcttggcaggtttatggagctttgacgcgtgcagctggtctctgtatgtatgatcggctc
aaaatgttacctggtttgttaattccaccaagtcttgctatctggaagagcaatggaaga
gttatgacttcaatgccaaataaacgcaaagctagcacagaccacttaatgcagcaacca
ccgcttaagaaaatagcagcagatagtgcaattggtgccatgccaaagaactccatgcca
gttgagatgcaaggggcagcaagtggatttcctacagcagttggagcttccagtgtgtca
gtatcagcaatatctcggcagttatccaatgaaaacgtgccacgaagagagattagtgga
agggggttaaaaacgtcaactgttctcgcacaggcttggaaggaggacatggatgcgggg
catttattagcatccctctttgaacttttcagtgaaagcatgttctcctttactcccaaa
cctgagttgtcttttttcttgtga
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