Populus alba (white poplar): 118056938
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Entry
118056938 CDS
T07314
Name
(RefSeq) THO complex subunit 4B isoform X1
KO
K12881
THO complex subunit 4
Organism
palz
Populus alba (white poplar)
Pathway
palz03013
Nucleocytoplasmic transport
palz03015
mRNA surveillance pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118056938
09122 Translation
03013 Nucleocytoplasmic transport
118056938
03015 mRNA surveillance pathway
118056938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118056938
03041 Spliceosome [BR:
palz03041
]
118056938
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118056938
TREX complex
118056938
Spliceosome [BR:
palz03041
]
Complex C
Other components
EJC/TREX
118056938
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118056938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
Btz
Motif
Other DBs
NCBI-GeneID:
118056938
NCBI-ProteinID:
XP_034925265
LinkDB
All DBs
Position
16:complement(10016729..10018558)
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AA seq
249 aa
AA seq
DB search
MTTTALDMSLDDIIENNRKSSNSRGRPRSSGGPGPSRRFSNRAGNITTPYSKKLLQPQVQ
APETSWQHDMFMDSPVSASAYPARASSIETGTKLYISNLDFGVSTEDIKELFSEIGDLKR
YSVHYDRSGRSEGTAEIVFARREDAVSAVKRYNNVQLDGKPMKIEIVGTNIATRPAVPPS
TNGMYRNQNIAAPRSSSQGRGGTTGRPRGGGHGVRRGGRGRGRGRGEKISAEDLDADLEK
YHSEAMQEN
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaacggccctggacatgtctctagacgacataatagaaaacaacaggaagtcg
tcgaattctcgaggcagacctcgttcttctggcggccctggtccttcccgtcggttctcc
aatcgcgcgggaaacataacaacgccctattccaagaaactgctacagccccaggtccaa
gctccagagacgtcatggcaacacgacatgttcatggatagtcctgtttctgcttctgca
tatcctgctcgtgcttcttccattgagactgggactaaactctatatttccaacttggat
ttcggtgtttctactgaagacatcaaggagcttttctcggagattggtgaccttaaacga
tattcagtccattatgataggagtggaagatctgagggaacggcggagatagtctttgca
cggcgggaagatgctgtctctgctgtcaagagatacaataatgttcaactggatggaaag
ccaatgaagattgagattgtgggaacaaatattgccactcggcctgctgtccctccatcc
actaatggcatgtacaggaatcaaaatatcgctgctcctagaagtagtagccaaggaagg
ggtggtaccacgggacggcctcgtggtggtgggcatggagttagaaggggtggtcgtgga
aggggtagaggtcgtggtgaaaagatatctgcagaagatctagatgcagatttagaaaag
taccattcagaagctatgcaagaaaactga
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integrated database retrieval system
