Populus alba (white poplar): 118057052
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Entry
118057052 CDS
T07314
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03013
Nucleocytoplasmic transport
palz03015
mRNA surveillance pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118057052
09122 Translation
03013 Nucleocytoplasmic transport
118057052
03015 mRNA surveillance pathway
118057052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118057052
03041 Spliceosome [BR:
palz03041
]
118057052
03009 Ribosome biogenesis [BR:
palz03009
]
118057052
03012 Translation factors [BR:
palz03012
]
118057052
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118057052
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118057052
mRNA cycle factors
Stress granule specific factors
118057052
Spliceosome [BR:
palz03041
]
Complex C
Other components
EJC/TREX
118057052
Ribosome biogenesis [BR:
palz03009
]
Eukaryotic type
90S particles
Helicases
118057052
Translation factors [BR:
palz03012
]
Eukaryotic type
Initiation factors
eIF-4
118057052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
AAA_22
Cas3-like_C_2
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
118057052
NCBI-ProteinID:
XP_034925395
LinkDB
All DBs
Position
5:7149948..7154855
Genome browser
AA seq
407 aa
AA seq
DB search
MATSVVPAGRSARRAAAEDEKLVFETTEGVEPVASFDEMGLKEDLLRGIYNYGFEKPSAI
QQRALMPIIKGRDVIAQAQSGTGKTSMIALTVCQLVDTASREVQALILSPTRELAEQTER
VITVIGENINIQVHACIGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIRVL
VLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITSKFMTDPVKILVKRD
ELTLEGIKQFFVAVEKEEWKFETLTDLYDTLTITQAVIFCNTKRKVDWLTAKMVEFNFTV
SSMHGDMPQKERDAIMSNFRSGETRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR
IGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNIGDLI
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaagcgtagtaccagcggggcgcagcgcgcggagggcggcggcggaggatgaa
aagctggtgtttgaaacgacggagggagtagaacctgtggcaagttttgatgagatggga
ttaaaagaagatttattgagagggatttataattatggatttgaaaagccgtcagcaata
caacaaagagctttaatgccgataattaaaggccgtgatgttatagcacaagctcaatct
ggtactggaaagacttctatgattgctcttactgtttgtcagctcgttgatactgctagc
agagaggtccaggcattgatattgtcacctacaagggaactggcagagcagacagagaga
gtgataactgtaattggtgaaaacattaatatacaagtgcatgcatgcattggaggaaaa
agtgtgggtgaggatattcgaaaactagaacatggagttcatgtagtttctgggactcct
ggcagagtctgtgacatgatcaagaggaggtcattacgcacaagagccatcagagtgcta
gttcttgatgaatctgatgagatgttgagcagagggttcaaggatcaaatctatgatgtg
tacagatatctcccacccgagcttcaggttgtcttgatttctgctactcttcctaatgaa
attttggagattactagcaagttcatgacagatcctgtaaagattcttgtgaaacgtgat
gagttgactttggagggcatcaagcaattttttgttgccgtggaaaaagaagaatggaaa
tttgagactctgactgacctttatgatactcttaccatcactcaagctgttattttctgc
aatacaaagcgaaaggttgattggctaactgccaagatggttgaatttaacttcactgtc
tcatcaatgcatggtgacatgcctcaaaaggagagagatgcaattatgtctaatttccgg
tctggtgaaactcgtgtactgatcacaactgatgtttgggctcgggggcttgatgttcaa
caggtatctctggtgattaactatgaccttccaaacaaccgagagctttacattcatcga
attggtcgttctggtcgttttggacggaagggtgttgctattaacttcgtcaaaagtgat
gatatcaggattttaagggatattgaacagtattacagcacccagattgatgaaatgcct
atgaacatcggtgatctgatataa
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