Populus alba (white poplar): 118057292
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Entry
118057292 CDS
T07314
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118057292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
palz03041
]
118057292
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118057292
Spliceosome [BR:
palz03041
]
Complex C
Other components
Step II factors
118057292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
AAA_16
TsaE
Sigma54_activ_2
Flavi_DEAD
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
118057292
NCBI-ProteinID:
XP_034925711
LinkDB
All DBs
Position
15:6924310..6929009
Genome browser
AA seq
1175 aa
AA seq
DB search
MATAAENDAGLKKLEYLSLVSKVCSELETHLGFGDKILAEFITELGRSCETVDEFDAKLK
ENGAEMPDYFVRTLLTIIHAILPPKAEKEGKKDKENDGSGKDSKFKALSIKDSRDRVKEI
DRELEIEAEEKSRRENEDMHRERDNDGRHRERDRRERDRDRERDRDRDRERERDMYDRYD
RRRDRGRRRDGHDIEDGEGERERRNGRHGYGGGNSNEPELYGVYKGRVSRVMDTGCFVQL
SDFRGKEGLVHVSQIATRRVGNAKDVVKRDQEVYVKVISVSGNKLSLSMRDVDQNSGKDL
LPLKKRDDEEDGFRSNALGLSKELPVTRTGLSGIRIVEEEDTGPSRRPLKRMSSPEKWEA
KQLIASGVLSVQEYPMYDEEIDGLIYQEEGVEEELEIEMNEDEPAFLQGQTRYSVDMSPV
KIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLA
QELRGVGLSAYDMPEWKKDAFGKALTFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQV
LVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVG
YAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKK
LVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLIT
VLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSR
IFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQAS
AKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGFTTLTMKAMGINDLLSF
DFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSD
EILTMIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCF
ENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEG
YRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKV
SDPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccgcagcagaaaacgacgccggattgaagaagctcgagtacctctccctcgtc
tccaaggtctgcagcgaactcgaaactcacttggggtttggagataagatcttagctgag
ttcatcaccgagttaggtcggagttgcgaaacagtagatgagttcgatgcgaagctgaag
gaaaatggagctgaaatgcctgattactttgttcggacattgctgacgattattcacgcg
attttgccgccgaaagcggagaaggaggggaagaaagataaggagaatgatgggtcaggt
aaagattctaaatttaaagctctctcgattaaagatagtagagacagagtgaaagaaatt
gatagggaattggaaattgaagctgaagagaaaagtagaagagagaatgaagacatgcat
agagaaagagataacgatggtagacatagagagagagataggagagagagagatagggat
agagagagggatagggatagagatagagagagagaaagagatatgtatgatagatatgat
aggaggagagatagaggaagaaggagagatggacatgatatagaggatggtgaaggtgag
agggagagaaggaatgggagacatgggtatggtggtggtaatagtaatgagccggaattg
tatggggtttataaggggagggtgtcgagggtgatggatacaggttgttttgtccagttg
agtgattttagggggaaggagggtttggttcatgtttcgcagattgcaactaggagagtt
gggaatgcaaaggacgtggttaagagggaccaggaagtttatgttaaggtgatttcagtc
tcagggaacaagctgagtctttcgatgagggatgttgatcagaatagtgggaaagatttg
cttccattgaagaagagggatgatgaggaggatggttttaggagcaatgctttgggtttg
tctaaggagctgccggtgacgaggacagggttgtcagggattaggattgtggaggaggag
gatactggtccgtcacggagacctttaaagagaatgagctcgccagagaagtgggaagca
aaacagttgattgcttcgggggttttgagtgtgcaagagtaccccatgtatgatgaggaa
atagatgggttgatttatcaagaagagggagttgaggaagagcttgagattgagatgaat
gaggacgagcctgcatttttgcaagggcagactaggtattctgttgatatgtcaccagtt
aagatttttaagaatcctgaaggttcattgagtcgtgcggctgctcttcagtctgcactt
ataaaggagagaagagaagtgagggagcagcagcagaggactatgcttgattcaatacca
aaggatcttaatcgtccttgggaagacccaatgcccgagactggcgagaggcatcttgcc
caggagctgcgtggtgttggcttatctgcttatgacatgcctgaatggaagaaggatgca
tttgggaaagcactgacatttgggcagcgatccaagttatctatccaggaacagaggcag
agcttgccaatttacaaattgaaaaaagagttaattcaggctgtccatgacaatcaggtt
ctggtggttattggtgagacaggttcaggtaagactactcaggtgacacagtatcttgct
gaggcaggttataccactaggggtaagattggatgtactcagcctcgtagggtggctgct
atgtctgtagccaagagggtggctgaagagtttggctgtcgtttaggtgaggaagttggc
tatgctattcgttttgaggattgcactggaccagatactgtaatcaagtatatgacagat
ggtatgctgcttagggagattctgattgatgagaacctttctcagtactcggtgataatg
ctagatgaagctcatgagaggaccattcacactgatgtccttttcgggttgctcaagaaa
cttgtgaagagaagacctgatcttcgcttgattgtcacatcagccacactggacgcggag
aaattttcagggtatttcttcaactgtaacatattcacgattcctgggagaacatttccc
gtggagatattgtacaccaaacagccagaaagtgactacttagatgcatctctgattact
gtcttgcaaatccacttgactgaacctgaaggtgacatacttctattcttgacaggccag
gaggagattgattttgcatgtcaatctctttatgagaggatgaaaggattaggaaaaaat
gttcctgaattgatcattctgcctgtttatagtgctcttcctagtgaaatgcagtcaaga
atctttgatcctgccccacctggaaagaggaaggtggttgtggcaactaatattgctgaa
gcctctttgacgattgatggaattttttatgttattgatcctgggtttgccaagcagaac
gtgtataatccaaagcaagggctcgattctctagttataacaccaatttcacaagcatct
gccaagcaacgagctggacgtgctgggcgtactgggcctggaaaatgttaccgtctctac
acagaaagtgcataccgcaatgagatgtctcccacctcaattccagaaatccaaagaatt
aatcttggattcactacgcttacaatgaaggctatgggaattaatgacctattgtctttt
gattttatggatccaccttcaccgcaggccctgatttctgccatggaacagctatacagc
cttggagctctggatgaggaaggacttctgaccaaactagggaggaaaatggcagaattt
cctctggatccaccattgtctaaaatgttgctggctagtgtagacctcgggtgcagtgat
gagattttgactatgattgccatgatccaaactggtaacatcttttacagacctagagaa
aaacaagctcaggctgatcagaagagggccaagtttttccagcccgaaggagaccatctg
actttgcttgctgtatacgaggcttggaaagccaagaacttttcaggaccttggtgtttt
gagaactttgtccaatctcgatccttgaggagagcacaggatgtcagaaaacagcttcta
agcatcatggataagtacaaattagatgttgttagtgctgggaagaattttaccaagata
aggaaagcgattacagctggattctttttccatgcagctagaaaggacccacaggagggt
tataggactttggttgagaaccagccagtttatatccaccccagcagtgctcttttccag
agacaaccagactgggtcatctaccatgagctggtaatgactacaaaagagtatatgcgc
gaggtcacggttatagatcccaaatggcttgtggagctagctcccaggttctttaaagta
tcagatcctacaaaaatgagcaagcgaaagcgtcaagaacgcattgaacctctctacgat
agataccacgaacctaattcatggcgtttgagtaaaaggcgagcttaa
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integrated database retrieval system
