KEGG   Populus alba (white poplar): 118057446
Entry
118057446         CDS       T07314                                 
Name
(RefSeq) histone deacetylase 6
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
palz  Populus alba (white poplar)
Pathway
palz03082  ATP-dependent chromatin remodeling
palz03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:palz00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    118057446
   03083 Polycomb repressive complex
    118057446
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:palz03036]
    118057446
Enzymes [BR:palz01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     118057446
Chromosome and associated proteins [BR:palz03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     118057446
   HDAC complexes
    Sin3A-HDAC complex
     118057446
    BRAF-HDAC complex
     118057446
    REST complex
     118057446
    SHIP complex
     118057446
    MiDAC complex
     118057446
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     118057446
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    118057446
  Chromatin remodeling factors
   NuRD complex
    118057446
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 118057446
NCBI-ProteinID: XP_034925914
LinkDB
Position
15:complement(14853982..14928734)
AA seq 467 aa
MEDITGGASLPSTGTDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYALHR
RMEINRPFPAGPTDIRKFHSDEYVEFLSSVSPQSVGDPAFGRQLKRFNVGEDCPVFDGLF
GFCQASAGGSIGAAVKLNRGDADIALNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVH
RRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKYGDFFPGTGHIKDTGAGQGKNYALNIP
LNDGMDDENFRGLFRPLIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRF
LRSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHVEP
SNVENLNSPKDMERIRNILLEQLSRLPNAPSVPFQTTPPTTEVPEEAEEDMDQRPKRRIW
NGEDFESDHDEDEKPGPRFFNADAQPNNKIRDGVDAMEEDKKEHPGL
NT seq 1404 nt   +upstreamnt  +downstreamnt
atggaggacatcaccggaggcgcatctttaccatcaacaggaacagacgcaaaaaagcgc
cgagtcacctacttctacgaacccacaatcggcgactactactacggtcaaggccaccca
atgaaaccccatagaatccgtatggcccacaacttgatagtccactacgctctccaccgt
cggatggaaatcaaccgtccattcccagcaggtcccacagacatacgaaagttccattct
gatgagtacgtggaattcttgtcttcagtgtcgccacaatctgtgggtgatccagcattt
gggaggcagttgaagaggtttaatgttggtgaagattgtccagtttttgatgggttattt
gggttttgccaagcctctgctggtggctctattggtgctgctgttaagcttaatagaggg
gatgctgatattgctttgaattgggctggtggcttacatcatgctaagaagagtgaggct
tctgggttttgttatgttaatgatattgttcttggcattcttgaattgctcaaagttcac
aggcgtgtactgtatgtagatattgatgtccaccacggagatggtgttgaggaggcattc
tacactactgacagggttatgacagtgtccttccataaatatggagatttctttccaggg
actgggcacattaaagacactggtgctgggcaggggaaaaactatgccctgaatattcca
ttaaatgatgggatggatgatgaaaatttccgtggtctgtttcggcctctaatccaaaag
gtgatggaggtttatcaacctgatgcagttgttctccaatgtggtgcagattcgttgtct
ggtgataggttggggtgtttcaatttgtctgttaagggccatgcagactgccttcgcttt
cttagatcttataatgttcctctgatggtcttgggtgggggtggctatactatcaggaat
gttgcccgttgctggtgctatgagacagctgttgcagttggggtggaaccagataataaa
ttgccttacaatgagtactttgagtactttggtcctgattatacacttcatgttgagcca
tccaacgtggagaacctaaactcacccaaagatatggagagaataaggaacatactgcta
gagcaactttctcgactgcccaatgctcccagtgtaccttttcaaacaacaccacccaca
actgaagttccggaagaggctgaagaggacatggatcaaagaccaaagcgtcgcatatgg
aatggtgaggattttgagtctgatcatgatgaagatgagaaacctggacctagatttttc
aatgctgatgcacagccaaataataagataagggatggtgtggatgcgatggaagaagac
aagaaagagcatccagggttgtga

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