Populus alba (white poplar): 118057558
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Entry
118057558 CDS
T07314
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118057558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
palz03041
]
118057558
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118057558
Spliceosome [BR:
palz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
118057558
Complex C
U5 SnRNP specific factors
118057558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
Motif
Other DBs
NCBI-GeneID:
118057558
NCBI-ProteinID:
XP_034926058
LinkDB
All DBs
Position
15:complement(15863047..15871151)
Genome browser
AA seq
2184 aa
AA seq
DB search
MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPETLWGRIDPRSFGDRAY
RGRPAELDEKINKAKRKKKERDAVSEAGPTRQAKRRRLREESVLTSTEEGVYQPKTKETR
AAYEAMLSVIQQQLGGQPLNIVSAAADEILAVLKNESVRTQDKRKEIEKLLNPIPNNMFE
QVVSIGRLITDYQDAGDGAGGTVANGDDALDDGVGVAVEFDEDNEDEEEDSDLDMVPEEE
EEEDDVVEPGGSGAMQMGGGIDDDEMGEANEGLNLNVQDIDAYWLQRKISLAYEQQIDPQ
QCQKLAEEVLKILAEGDDREVETKLLVHLQFDKFSLIKFLLRNRLKIVWCTRLARAKDQE
ERKQIEEEMMSLGPDLAGILEQLHATRATAKERQKNLEKSIREEARRLKDETGGDGDRDR
RGLVDRDAESGWVKGQPQMLDLDSIAFEQGGLLMANKKCDLPVGSFKHQKKGYEEVHVPA
LKQKPIPPDERFVKISEMPDWAQPAFKGMQQLNRVQSKVYETALFKADNVLLCAPTGAGK
TNVAVLTILQQIALNRNPDGSFNNNNYKIVYVAPMKALVAEVVGNLSNRLQEYGVQVKEL
SGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE
SIVARTVRQIETTKEHIRLVGLSATLPNFEDVALFLRVDLDKGLFHFDNSYRPVPLSQQY
IGINIKKPLQRFQLMNDICYEKVMDVAGKHQVLIFVHSRKETAKTARAIRDTALANDTLS
RFLREDSASREILQTHTELVKSNDLKDLLPYGFAVHHAGMTRGDRQLVEDLFADGHVQVL
VSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGII
ITGHSELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRM
LRNPTLYGLAPDVLTRDITLEERRADLIHSAAAILDKNNLVKYDRKSGYFQGTDLGRIAS
YYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIK
ESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLAE
KALNLCKMVNKRMWSVQTPLRQFHGIPNEILMKLEKKDLSWERYYDLKPQEIGELIRFPK
MGRTLYKFIHQFPKLNLAAHVQPITRTVLRVELTITADFQWEDNVHGYVEPFWVIVEDND
GDYILHHEYFMLKKQYVDEHQVVDLTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVS
FRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDNV
LVAAPTGSGKTICAEFAVLRNHQKGPESVMRAVYIAPLEAIARERYRDWERKFGRGLGMR
VVELTGETATDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG
PVLEVIVSRMRYIASQIENKIRIVALSSSLANAKDLGEWIGATSHGLFNFPPGVRPVPLE
IHIQGVDIANFEARMQAMTKPTYTSIVQHAKNGKPAIVFVPTRKHVRLAAVDLMTYSSMD
GGEKPPFLLRSIEELEPFIGKIQEEMLRATLHHGVGYLHEGLSSLDQEVVSQLFEAGWIQ
VCVMSSSMCWGVPLSAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC
VIFCHAPRKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYR
RLTQNPNYYNLQGVSHRHLSDHLSELVENTLTDLERSKCAAIEEDMDLSPLNLGMIASYY
YISYTTIERFSSSLTPKTKMKGLLEILSSASEYAQLPIRPGEEEVLRRLINHQRFSFENP
RYADPHVKANVLLQAHFSRQSVGGNLALDQREVLLSGSRLLQAMVDVISSNGWLSLALLA
MEVSQMVTQGMWERDSMLLQLPHFTKDMAKKCQENPGKSIETVFDLVEMEDDERRELLQM
SDSQLLDIVRFCNRFPNIDMSYEVMDGDNVRAGEDITLLVTLERDLEGRTEVGPVDSPRY
PKAKEEGWWLVVGDTKSNQLLAIKRVSLQRKSKVKLEFAAPADTGRKSYTLYFMCDSYLG
CDQEYNFSVDVGEAAGPDDDSGRE
NT seq
6555 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatctgggtggtggtgctgaggcacacgctcgattcaagcaatatgagtataga
gccaattctagtctggtgcttactactgattctcgcccacgtgatactcatgagcctact
ggtgaacctgagactctctggggcaggattgaccctagaagttttggtgaccgtgcttat
agagggagacctgctgagttagatgagaagattaacaaggctaagaggaagaagaaggag
cgggatgctgtttctgaagctggtcctactcgtcaggctaagagacggcgccttagagag
gagagtgttctcacttctactgaggagggagtttaccagcccaagaccaaggaaactaga
gctgcctatgaggctatgctcagtgtaattcagcagcaattgggtggtcagcctcttaat
attgtcagtgctgccgctgatgagattttggctgttctcaagaatgagtctgttaggacc
caggacaagaggaaggagattgagaagttgttgaatcctattcccaacaatatgtttgaa
caggttgtttcgattggtaggctcatcactgactaccaagatgcgggtgatggtgctggg
ggcactgttgctaatggcgatgatgcccttgatgatggtgtgggtgttgctgttgagttt
gatgaagataatgaagatgaggaagaggatagtgatctggatatggtgccagaggaggaa
gaagaggaagatgatgtggtggaaccaggtggttctggggctatgcaaatgggtggcggg
attgatgatgatgaaatgggggaggcaaatgagggattgaaccttaatgttcaggatatt
gatgcttactggctccaaaggaagatttcactagcttatgaacagcagattgacccacaa
cagtgccagaagctagctgaagaagtgcttaagatacttgctgagggagatgaccgagaa
gtcgaaacaaagttgctggtccatctccagttcgataagttcagcctcattaagtttctt
ttgcggaataggctgaagattgtctggtgtacacgtttagctagggccaaggaccaggag
gagaggaagcagattgaggaggaaatgatgagtttaggtcctgatttggcaggaatcttg
gagcaactgcacgccacaagggcaactgctaaggagaggcaaaagaacttggagaagagt
ataagagaagaggctcgccggctgaaggatgagactggtggagatggagatagggatagg
aggggacttgttgatagagatgcagaaagtggttgggtgaaaggccagccccagatgctt
gacttggacagcattgcttttgaacagggtggccttttgatggcaaataaaaagtgtgat
cttcctgttggttcctttaaacatcagaaaaagggttatgaagaagttcatgtaccagca
ttgaagcaaaagccgatacctcctgacgagaggtttgtcaaaatatcggaaatgccagac
tgggctcaaccagcttttaaagggatgcaacagttgaacagggtgcagagtaaagtctat
gagactgcccttttcaaggcagataatgtactcctgtgtgcccctactggagcaggaaaa
accaatgttgcagtcctcactatacttcagcaaattgctttgaataggaatccagatggt
tcattcaacaataacaattataagatagtctatgtggctccgatgaaagcccttgtggct
gaagttgtgggtaatttgtccaatcgtcttcaggagtatggtgtccaggtgaaggaacta
agtggagaccaatcactgacccgccaacaaattgaggaaactcaaataattgtgacaacc
cctgaaaagtgggacattatcaccagaaaatctggcgatcgcacctatactcagctggtg
aaactactgattattgatgagattcatcttcttcatgataacagaggacctgtgcttgag
agtattgttgccagaactgtcaggcaaattgaaaccaccaaggaacatatccgattggtg
gggttgtcagctacacttcctaattttgaggatgtggcattgtttctaagggttgatctg
gataaggggctcttccattttgataatagctatcggccagttcctctgtctcaacagtat
attggaatcaatataaagaagccactgcagaggtttcagttgatgaatgatatctgttat
gagaaggtaatggatgtagcaggaaagcatcaagttcttatctttgtccactcaaggaag
gaaacagccaaaacagctcgagcaataagggatactgcacttgctaatgatactctaagt
agattcttgagggaggacagtgcaagtcgtgagattctccaaactcacacagaattggtg
aaaagcaatgatctcaaagatcttctgccctatggttttgctgttcatcatgctgggatg
acaagaggcgatcgccaacttgttgaggacctctttgctgatgggcacgtgcaagtattg
gtttctactgcaactcttgcttggggtgttaacttgcctgctcacactgtgattatcaaa
gggactcagatttacaatccagaaaaaggagcatggactgaactaagcccactagatgtt
atgcagatgttgggtcgtgcaggaaggcctcagtatgattcttatggggaagggattatc
ataactggccatagtgagctgcagtactatctctctttaatgaatcaacaacttcccatt
gaaagtcagttcatatccaagctggctgatcagttgaatgcagaaattgttctaggaacg
gttcagaatgctagggaagcttgccattggcttggctatacatacttgtacatacgaatg
ttgcggaaccctacactctatggcctagcaccagatgttcttacaagagatattacattg
gaggagaggagagctgatctgatacattctgctgctgctatcctggataaaaataatttg
gtcaagtatgacaggaagagtggatattttcaggggactgacttgggtcgtattgctagc
tactactatattactcatggaacaatatccacatataacgagcatttgaagccaacaatg
ggagatattgagctgtgtcgtctattctcacttagtgaagaatttaaatatgttacagtt
agacaagatgagaagatggaattggcgaagcttttggaccgtgttccaattccaatcaag
gaaagcctggaggagcctagtgccaaaattaatgttttgctgcaagcatatatttctcag
ctaaagcttgaagggctttcattgacatctgacatggtgttcataactcagagtgctggc
cgtcttatgcgagctctctttgagattgtcttgaaaagaggatgggcccagttagctgag
aaggctctgaacttgtgtaaaatggttaataagagaatgtggagtgtccagactcccctt
cgccaattccatgggatcccgaatgaaattctgatgaagttggagaagaaggatttgtcc
tgggaaaggtattatgaccttaaaccacaggagattggtgaactcatccgatttcccaag
atgggcagaacactgtacaagttcatccaccaattcccaaagctaaacctagcagcacat
gttcaacccatcactcgcaccgtgttgagggttgaacttacaataacagcagactttcaa
tgggaggacaatgtacatggttatgtggagcctttttgggttattgtggaggataatgat
ggtgactatattcttcatcatgagtactttatgctgaaaaagcagtatgttgatgagcac
caggttgtggacctcacactaaatttcacagttcctatatatgagccgttgccacctcag
tatttcattcgtgttgtgtcagataaatggcttggttcacaaacagttttgcctgtctct
ttcaggcatcttatcttgccagaaaaatatccgcctccaacagagttgttagacttgcag
ccactgcctgtgactgcattgagaaatccatcatatgaagctctttatcaagattttaag
cattttaatccagtgcaaactcaggtctttactgttctgtataatactgatgacaatgtc
ttggttgctgcgccaacagggagtgggaagactatctgtgcagagtttgccgtactgagg
aatcaccaaaagggacctgagagtgtcatgcgtgcagtgtatattgcacctcttgaagca
attgccagggaacgctatcgtgattgggagagaaagttcggtagaggtcttggcatgcgg
gttgttgaattgactggggaaacagccacggacttgaagctgctcgaaaagggtcaaata
atcataagcactccagagaaatgggatgctttgtctcgacgctggaagcagcgaaagtat
gtgcagcaagtcagtctttttatcattgatgagcttcacttgattgggggtcaaggtggt
cctgtcttagaggtgattgtctccaggatgcgatacattgctagtcagatagagaacaag
atacggattgtggctttgtcatcttctctggcaaatgcaaaggatcttggggagtggata
ggagctacatctcatggccttttcaattttcctcctggtgtgcgtcctgtgcccctggaa
atacacattcaaggtgtagatattgccaattttgaggcaaggatgcaagccatgacaaaa
ccgacatatacttctattgtccagcatgcaaagaatggaaagcccgctattgtgtttgtc
cccacaagaaagcatgtgcgacttgctgctgtagatctgatgacatactcaagtatggat
ggtggagagaagccaccttttctgttgaggtccattgaggaattggagcctttcattgga
aagattcaggaagaaatgttgagagccactttgcaccatggtgttggctacttgcacgag
ggcttgagcagcttggatcaagaagttgtgtcccaactgtttgaagctgggtggattcag
gtttgtgtcatgagtagttcaatgtgctggggagtgcctttgtcagcacatttggttgtt
gtgatgggtactcaatactatgacgggcaagaaaatgctcacacagattatcctgttaca
gatcttctgcagatgatgggtcatgctagccgacctcttctagataattctggaaagtgt
gtcatcttttgccacgcacctcgtaaagaatattacaagaaattcttatatgaagcattt
cctgtggaaagtcatttgcaccatttcttacatgataattttaatgctgaaattgttgct
ggagttattgagaacaagcaggatgctgttgattatctcacatggacattcatgtatagg
aggctcactcagaatccaaactactacaatctccagggagttagtcacaggcatctttct
gatcacctttcagagcttgttgagaacacattgactgacctagagaggagtaaatgtgct
gctattgaagaggacatggacctttcccctctgaatcttggcatgatagcgtcttactat
tacatcagttatactactattgaacgttttagctcctctttgactcccaaaacaaagatg
aagggtcttctggaaatcctctcttcagcctcagagtatgcacaattgccgatacgaccc
ggggaggaggaggtgcttcgaagattaatcaatcaccagaggttttcatttgaaaatcct
agatatgctgatccacatgtgaaggctaatgtattgctacaagcccatttctctaggcaa
tctgtgggtgggaacctagcattggaccagcgagaggtgctcctttctggcagtagattg
cttcaagcaatggttgatgtcatttcgagcaatggttggttgagccttgctctccttgca
atggaagttagccaaatggtgactcaagggatgtgggagcgtgattccatgcttctacag
cttccgcacttcactaaggacatggctaagaagtgtcaggagaaccctggaaagagtatt
gagacggtatttgatctggtggagatggaagatgatgagaggcgggagcttctgcagatg
tcagattcacagttgctagatattgtcaggttttgcaatcgattccccaacattgatatg
tcttatgaggtgatggacggtgataatgtgagggcaggagaagacatcactttgctggtc
actcttgaaagggatctggaggggaggacagaggtgggacctgttgattcacccaggtat
cctaaagccaaagaagaagggtggtggcttgttgtcggtgataccaagagcaaccagctg
cttgccatcaaaagggtttcccttcagaggaagtcaaaggtgaagctggagtttgctgct
cctgcagatactggaaggaagtcgtatactctctatttcatgtgtgattcgtatcttggt
tgtgaccaggaatacaacttctctgttgatgttggtgaagcagcaggccccgacgacgac
agtggaagagagtaa
DBGET
integrated database retrieval system
