Populus alba (white poplar): 118057747
Help
Entry
118057747 CDS
T07314
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118057747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118057747
03036 Chromosome and associated proteins [BR:
palz03036
]
118057747
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118057747
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
118057747
mRNA degradation factors
5'-3' decay
Decapping complex
118057747
Chromosome and associated proteins [BR:
palz03036
]
Eukaryotic type
Gene silencing
piRNA pathway
118057747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Motif
Other DBs
NCBI-GeneID:
118057747
NCBI-ProteinID:
XP_034926311
LinkDB
All DBs
Position
2:8216750..8224631
Genome browser
AA seq
496 aa
AA seq
DB search
MNNNNRGRYPPGIGAGRGGGMNANPNFQSRVPQQQYVQRNFGQNHHQQQYYQHQQHHNQQ
QQQQQWLRRNQLTAADSSVDEVEKTVQSEAVDSSSQDWKAKLKIPPADTRYRTEDVTATK
GNDFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCVPA
LEKIDQDNNFIQVVILVPTRELALQTSQVCKELGKHLKIQVMATTGGTSLKDDIMRLYQP
VHLLVGTPGRILDLAKKGVCVLKNCSMLVLDEADKLLSPEFQPSIEQLIRFLPSNRQILM
FSATFPVTVKDFKDRYLEKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQIN
QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFT
RGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGT
EIKQIPPHIDQAIYCQ
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaacaatagaggaaggtatccgccggggatcggtgccggtagaggcggaggt
atgaacgcgaaccctaattttcaatcaagggttccgcaacagcagtatgtgcagagaaat
ttcgggcaaaatcatcaccaacaacaatactatcagcatcaacagcatcacaatcagcaa
caacagcagcagcagtggttgaggaggaatcagttaactgctgcggattcgagtgttgat
gaggtcgaaaagactgttcagtctgaggctgttgactcgagttcacaagattggaaggca
aagctaaagataccaccagcagatacacgatacagaactgaggatgtgacagccacaaag
gggaatgatttcgaggactattttctgaagcgcgagttgcttatgggaatatacgagaag
ggttttgaaagaccatctcctattcaggaagagagcataccaattgctcttactggtagc
gatattcttgctagagctaaaaacgggacagggaaaacagctgcattttgcgtccctgcc
ctggaaaaaattgaccaagacaacaattttattcaagttgtgatacttgtgccaacacgt
gagttggctcttcagacatcacaggtttgtaaggagctagggaagcatttgaaaattcaa
gtgatggccaccactggcggtacgagtctaaaggatgacattatgcgtttatatcaacca
gtccatttacttgtcggaactccaggaagaatacttgatcttgcaaaaaagggcgtgtgt
gttttgaaaaactgttcaatgcttgttttggatgaggccgataaacttttgtctccagag
tttcaaccttcaatagagcagcttattcgttttcttccttcaaatcgtcagattttgatg
ttttcggccacatttcctgttactgttaaggattttaaagatagatatctagagaagcca
tatgttatcaatcttatggatgaactaactctcaagggtattacacaatattatgctttt
gttgaagaacgacagaaagtccattgcctgaacactcttttctctaagctgcaaataaac
caatcaatcatcttttgcaactcagtgaaccgggtagaattactggccaagaagatcaca
gaacttggctattcatgtttctatatccatgcaaagatgttacaggaccatcgcaacaga
gtatttcatgacttccgcaatggtgcatgcaggaatcttgtctgtactgatctttttacc
aggggtatagacatccaagcagtgaatgttgttataaactttgacttccccaagaactca
gagacataccttcacagggttggtcgatcaggaaggtttggacaccttggtttagctgtg
aatttgatcacttatgaggaccggtttaacctgtataggattgagcaggaacttggaact
gaaattaaacaaatccctccacatattgatcaggcaatatattgccaataa
DBGET
integrated database retrieval system
