Populus alba (white poplar): 118057891
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Entry
118057891 CDS
T07314
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118057891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118057891
03012 Translation factors [BR:
palz03012
]
118057891
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118057891
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
118057891
Translation factors [BR:
palz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
118057891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
Dicer_dimer
ATPase
ResIII
AAA_14
AAA_11
NPHP3_N
Viral_helicase1
NACHT
PhoH
Rad17
Motif
Other DBs
NCBI-GeneID:
118057891
NCBI-ProteinID:
XP_034926513
LinkDB
All DBs
Position
10:complement(13019001..13030930)
Genome browser
AA seq
1210 aa
AA seq
DB search
MLSSLLHSPPWQIPQTVKPSTSVSSTAMKDRSPPSSFGAVYVPPHCRIRSLVSTPYCHSS
SNASSPSPPIGSKFHENHSKSTAVLNPRNRPPLHKQQRNGVADNNDFNSNKKPAPKFVSA
YDDRESEEGSDLETDTPVVQPGAYLSDDIEEWKRKLTMLLHDKEKQELISREKKDRRYFE
QIAALASKMGLHSHSYAKVVVFSKAPLPNYRFDLDDKRPQREVNLPLGLLQRVDAYLGDY
LYQRSRINSNFPDTFSRSTSSSLSTDDGLFEQPEPLASSKAVMEKILWRRSMQLCDQQQA
WQESPEGCKMLEFRKTLPAYKEKDAILAAISQNQIVIISGATGCGKTTQIPQFILESEVE
SVRGAVCNIICTQPRRISAMSVSERIASERGEKLGECVGYKVRLEGVKGKDTHLLFCTTG
ILLRRLLVDRSLKGITHVIVDEIHERGMNEDFLLIVLKDLLPHRPELKLILMSATLDAEL
FSSYFDGAPILRIPGFTYPVRTHFLENILEMTGYRLTQCNQIDGYGQEKMWRIGKQAPRK
RKSQIASSVEDALRTADFKEYSSQTRESLSCWNPDSIGFNLVEYLLCNICENERPGAVLV
FMTGWDDISSLKDKLQAHPFLGDPSRVLLLACHGSMASSEQRLIFDEPEEGVRKIVLATN
IAETSITINDIVFVLDCGKAKESSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECY
HLYPRCVYDAFAEYQLPEILRTPLQSICLQIKSLKLGSLSDFLSRALQSPELLAVQNAIE
YLKIIGALDQNENLTVLGRYLTMLPVEPKLGKMLILGAILNCLDPVLTVVAGLSVRDPFL
MPLDKKDLAEAAKSQFSGDYSDHLALVRAYEGWKDAERDLSGYEYCWKNFLSVQSMKAID
SLRKEFFSLLMDTGLVDGNPTTCNAWSHDEHLVRAVICSGLYPGICSIVHNEKSFSLKTM
EDGQVLLHSNSVNARESKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGSISRGDA
DGHLKMLGGFLEFYMQPSVAEMYQSLRRELDELIQTKLLNPRMDIHMHHELLSAVRLLVS
EDNCDGRFVFGCHFFKSSKPTVFATQPTLISRSDSGPGGDNSKSQLQTLLTRAGYAAPSY
KTKQLKNNQFRATVEFNGMQIMGQPCNNKKSAEKDAAAEALQWLVGGTQTSQEYINHMSM
LLKKSKKDHY
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgctatcttctctccttcattcacctccctggcaaattccccaaaccgtaaaaccctcg
acatctgtctcctccacagcaatgaaggaccggtcgccgccttcctcattcggcgccgtt
tacgtccctccacactgccgtatccgctccctcgtctccactccctactgtcactcctcc
tctaatgcttcttctccttctcctccaattggctccaaatttcacgaaaatcacagcaag
agcactgctgttttaaaccctagaaaccgtcctcctcttcataaacaacagagaaacggc
gtcgctgataataatgattttaacagtaataagaaaccggcaccgaaatttgtttctgcc
tacgatgaccgagaatcagaggaaggctctgatcttgaaacggacacccccgtggttcaa
cctggtgcttacctctctgatgacattgaggagtggaaacggaaactaacaatgcttttg
catgacaaggagaagcaagagttgatctcaagagagaaaaaggaccggcgttattttgag
caaatagctgctcttgcgagcaaaatgggcttgcacagccattcctatgcgaaagttgtt
gtttttagcaaggctccgcttccaaactacagatttgatttggatgacaagcgtccgcag
agggaggtgaacttacctcttggtttgctacaaagagttgatgcttatcttggagactac
ctctatcaaaggtccaggattaatagtaattttccagatacattttctagatcaaccagc
agtagtctctccacagatgatgggctttttgagcaacctgagccactggcatccagtaag
gctgttatggagaaaattctgtggcgaagaagtatgcaattgtgtgatcagcaacaagct
tggcaggaatctccagaaggctgcaagatgcttgaatttcgtaaaactcttcctgcttac
aaagagaaggatgccatattggcagccatttcacaaaatcagattgttataatctctggt
gcaactggctgcggcaaaaccacgcaaattccacaattcattttagaatctgaggtagaa
tctgttcgtggagctgtttgtaatattatatgtacacagccaagacgaatatctgctatg
tctgtttctgaaagaattgcttcagagagaggggagaaattgggtgaatgtgtcggatac
aaggttcggcttgagggtgtaaagggaaaagatacccaccttctcttctgtaccactggc
atcttgttgagaagactgcttgttgatagaagtttaaaaggaataactcatgtgattgtg
gatgagattcatgaacgtggaatgaatgaagattttctgctcattgtccttaaggatctc
cttcctcatcggccagaactgaagctgattctgatgagtgcaacccttgatgccgagctt
ttctcatcatattttgatggagctccaatactacgcattccaggttttacatacccagta
cgaactcattttctggaaaatattctggaaatgacgggttacagattaacccaatgcaac
caaattgatggttatggtcaggaaaagatgtggaggataggcaaacaagctccgagaaaa
aggaagagtcaaattgcttcaagtgttgaggatgctcttagaacagctgattttaaggag
tacagtagccagactcgggagtctttgtcatgttggaatcctgatagcataggttttaat
cttgttgaatatctcttatgtaatatttgtgagaatgagaggccaggtgctgttcttgtg
ttcatgacggggtgggatgacataagttctttgaaggataagcttcaagctcatcctttc
ttaggagatccaagccgagtcttgttgctcgcttgccatggttctatggccagctcagag
cagaggttaatatttgatgagcctgaagagggtgtgcggaaaatagtactggctactaat
attgctgagacaagtatcactatcaatgatattgtttttgttcttgactgtgggaaagca
aaggagtcttcctatgatgcattgaataacactccttgtctgcttccttcctggatttcc
aaggtttctgctcaacaaagaagaggaagagctggccgtgttcaaccaggagaatgttat
cacctctatcctaggtgtgtatatgatgcttttgcagagtaccaattgccagaaattttg
agaacgcctttgcagtctatttgtctacaaatcaaaagtctgaaacttggaagcctatct
gactttctatctagggctttgcagtcgcctgagttattagcggttcaaaatgccattgaa
tatttaaaaatcatcggagccttggatcagaatgaaaacttgactgttctaggtcgatat
ttgactatgcttccagtggagcctaagcttggaaaaatgctcattttaggtgctattttg
aattgcctggatccagtactaactgttgttgcaggtcttagtgtcagagatcctttcttg
atgccattggacaagaaggatcttgcagaggctgcaaaatctcagttttctggtgattat
agtgaccacctagcacttgtccgagcctatgagggctggaaagatgctgaaagagatctt
tctggatatgagtactgctggaaaaattttctctcagtgcaatctatgaaagctattgat
tctcttcggaaggagttcttctccttgctcatggatactggccttgtcgatggcaaccca
accacctgcaatgcatggagccacgatgagcatctggttcgagcagttatttgcagtggc
ctctatcctggaatttgttccattgtgcacaatgagaagtcattttcactgaaaaccatg
gaggatggccaggtgcttctgcactctaactcagttaatgctcgagaatcaaaaatcccc
tatccatggctggttttcaacgagaagataaaagttaatagtgtttttctccgggattca
actgctgtttctgattcagtgctgcttctatttggcgggagcatctctagaggggatgct
gatgggcacttgaaaatgttgggaggatttctggaattctacatgcaaccttctgtagca
gaaatgtatcagagcttgaggagagagctcgatgagctgattcagaccaaactgctgaat
cccaggatggacatacacatgcaccatgagcttctctcagcagtgcgtttgttagtttca
gaggataattgtgatggcagatttgtgttcggttgccattttttcaagtcctcaaaacca
actgtttttgctacacagccaaccttaatttcaaggagtgatagtggacctggaggtgat
aattccaagagtcagctccagacattgctcacccgggcaggatatgctgcaccatcctac
aagacaaagcaattgaagaacaaccaatttcgcgccactgttgagttcaatggaatgcaa
attatgggacagccttgcaacaacaagaagagtgcagaaaaagatgcagcggctgaagcc
ctgcagtggctggtgggtgggacccaaacaagccaggaatacattaatcacatgtcaatg
ttgctaaagaagagcaaaaaggatcattactaa
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