Populus alba (white poplar): 118058186
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Entry
118058186 CDS
T07314
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
palz
Populus alba (white poplar)
Pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118058186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
palz03041
]
118058186
Spliceosome [BR:
palz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
118058186
Complex C
U5 SnRNP specific factors
118058186
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
118058186
NCBI-ProteinID:
XP_034926778
LinkDB
All DBs
Position
3:<5042135..5052365
Genome browser
AA seq
2357 aa
AA seq
DB search
MWNDTGEQHLAPPGTAGPSIPPPPPSQPSYTVLAPSQTVSNPADAEAKLEEKARKWQQLN
TKRYSDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYK
LLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHF
KRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLING
PSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPL
YRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMIMYIKA
EDPDLPAFYYDPLIHPITSSNKERREKKIHDDDDDDEDFVMPEGVEPFLEDTQLYTDTTA
AGISLLFANRPFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNEL
HHRPPKAQKKKHLFRSLAATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLD
YNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQ
YTFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLF
FLRGIVPLLERWLGNLLARQFEGRHSKGTAKTVTKQRVESHFDLELRAAVMHDVLDAMPE
GIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRE
RIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHXLES
RKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALS
RIKRHLLTQRAFKEVGIEFMDLYSSLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNW
IKPADSEPPPLLVYKWCQGINNLQGIWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRL
VLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRAS
EIAGPPQMPNEFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPD
PNNENMVGYQNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYS
KDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMK
VFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTR
IKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMS
HEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPR
INTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQAL
GGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWW
SPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLD
QELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHRWPMSKPSLVAESKDVFDQKASN
KYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNW
FPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIW
FVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAK
WKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQSCLK
IEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDK
TIVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITP
PSQQRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAI
SATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQ
VKEIRCIAMPPQWGTHQQVHLPSALPEHDFLTDLEPLGWMHTQPNELPQLSPQDLTAHAR
VLENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEK
VQMLLSDRFLGFYMIPDNGPWNYNFMGVKHTVSMKYGIKLGTPREYYHEDHRPTHFLEFS
NLEEGETAEGDREDTFT
NT seq
7074 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacgacaccggagaacagcatttagcgcctccggggacggctgggccgtcgatc
ccaccgcctccaccgtcgcagccttcttacaccgtactggcgccgtcgcaaacggtgtcg
aatccagcggatgcggaggcgaagttggaggagaaggccaggaaatggcagcaacttaac
acgaagaggtacagtgataagcggaagtttggtttcgtcgagacgcaaaaggaggatatg
ccgccggaacacgtgaggaagattataagggaccatggcgatatgtcctcgaagaaatat
cgccatgataaacgtgtgtatcttggagcccttaaattcattccacatgcagtatacaag
cttcttgagaatatgccaatgccctgggagcaggttcgtgatgtgaaggttctataccat
attacaggagcgatcacttttgtgaatgaaattccatgggttgttgaacctatttactta
gctcagtgggggacaatgtggatcatgatgcgaagagaaaagagggatcggcggcatttc
aagagaatgaggtttccaccttttgatgacgaggaacctcctttagactatgctgataat
ttgttagatgttgatcctctagagcctattcaattagagttggacgaagaagaagattct
gctgtctatacttggttttatgaccataagcctcttgttaaaacgaagcttatcaatggt
cctagttacaggaagtggcatctctctcttccaataatggcgactcttcaccgcctggca
ggacagcttctttctgatttaattgaccgtaactatttttacttgttcgacatggagtcg
ttctttacagccaaagcattgaacatgtgcatacctggtgggcctaagtttgaacctttg
tatcgtgacatggagaaaggtgatgaggactggaacgaattcaatgacatcaacaaactc
attattcggtcacctttgcggacagagtatagaattgcatttcctcatctttacaataat
aggccccggaaagtaaaactctgtgtttatcacactcccatgatcatgtacattaaagct
gaggatcctgatttacctgctttctattatgatcctttgatacacccaataacctcctct
aacaaggaacgccgtgaaaaaaagattcatgatgacgatgatgatgatgaggattttgtt
atgccagaaggggtggaaccttttttggaggatacacagctttataccgacaccacagct
gctggcatttccttgttatttgctaaccgaccttttaacatgagatctggacggatgcga
cgggcagaagatataccccttgtgtcggagtggtataaggagcactgtcctccatcatat
cctgtcaaagttcgagtaagctatcagaaattgttgaaatgttttgttttgaatgaactg
catcatagaccgccaaaagctcagaagaagaagcacttgttccggtcattagcagcaact
aaattcttccaaaccacagagctagattgggctgaagcaggtctccaagtttgtaagcag
gggtacaacatgctgaatctattgatacaccggaaaaatttaaattacctccaccttgat
tataattttaacttgaagcctgtgaagacccttacgacaaaggaacgcaagaagtcacgg
tttgggaatgcttttcatctttgtcgtgagatcttgcgtttgacaaagcttgtggtagat
gccaatatacaattcaggttaggtaatgttgatgctttccaattggctgacggtcttcag
tatacattttcccatgttggtcagttgacaggaatgtacagatacaagtataggctgatg
cgccagataagaatgtgcaaagatcttaagcatttgatatattaccgcttcaatactggt
ccagtgggtaaggggcctggttgtggattttgggcaccaatgtggagggtatggctattt
ttcctacgtggcatagtgcctcttcttgaacggtggttgggtaatcttcttgcaagacag
tttgaagggcgccattcaaaaggaactgccaagactgttacaaagcagcgtgtcgagagc
cactttgacttggaactccgtgctgctgttatgcatgatgttcttgatgccatgccagag
ggcattaagcaaaataaggctagaacgatactgcagcaccttagtgaggcttggcgctgc
tggaaagcgaacattccatggaaggttcctggtttaccagttcccattgaaaacatgata
cttcggtatgttaagtcaaaagcagactggtggacgaatgttgctcactataatcgtgag
cgtatcagaaggggtgcgactgttgacaagacagtgtgcagaaagaatcttggaagactg
actcggttgtggttaaaggcagaacaggaacgtcaacacaactatttgaaggatggccca
tatgtcactccagaagaagctgttgcgatttacacaactactgtccatntgttggagtcc
agaaagttttcaccaattccattccctcccttgtcatacaagcatgacactaagctgctt
atccttgctttggaaaggttgaaagagtcatacagtgtggctgtgagattaaaccaactg
cagagggaagaactaggtcttattgaacaagcttatgataaccctcatgaggctttatca
cggatcaagcgtcacctgctcactcagcgtgctttcaaagaagtgggcatagagttcatg
gatttgtacagttctctgattccagtttatgaaattgagcctcttgaaaaaataacagat
gcttatttggaccaatatctgtggtatgaaggtgataagcgccacctctttccaaactgg
attaaacctgcagattccgagccaccaccactgcttgtctataaatggtgtcaaggcata
aacaatttgcaaggtatctgggacacaagtgaggggcagtgtgtggtgatgcttcagacc
aagtttgagaagttctttgaaaagattgacttgacaatgttaaataggcttcttcggttg
gtccttgaccacaatattgctgattatgtgactgccaagaacaatgttgtcctttcctac
aaggacatgagtcacacgaactcgtatggtttgatacgtggccttcagtttgcttctttt
gtggtgcagtattatggacttgtgctggatctcctgcttcttggattgacccgggccagt
gagatcgctggtccgccacaaatgccaaatgaatttatcacctactgggatacaaaggtt
gagacacgacatccaattcgtctttattccaggtacatagacagggtgcatatattgttt
cggtttactcatgaagaggcccgagatctaattcaaagatatctcactgagcatcctgat
cccaacaatgaaaatatggtcgggtatcagaacaagaaatgctggcctagagatgcaagg
atgaggcttatgaaacatgatgtcaatctcgggaggagtgttttctgggacatgaagaac
cgtctccctcgaagcatcacaactttagagtgggagaacagctttgtttctgtttacagc
aaggacaacccaaacctgcttttcagcatgtgtgggtttgaagttcggatacttcctaaa
ataagaatgactcaagaagcattcagcaatacaagagatggtgtttggaatttgcagaat
gagcagaccaaggaacggactgcagttgcttttctacgggttgatgatgagcatatgaaa
gtgtttgagaatcgtgtgaggcagattctgatgtcctcagggtcaactactttcacaaag
attgttaacaaatggaatacagccttgattggattgatgacatatttccgtgaagcaact
gtgcatactcaagagctgttagatttgcttgtaaaatgtgaaaataaaattcaaacccgt
atcaagattgggctaaactcaaaaatgccaagcagatttcctcctgttatcttctataca
ccaaaagaaattggaggacttggcatgttatccatgggtcacatattgatccctcaaagt
gatcttcgatatagtcagcaaacagatgttggtgtaacccatttcaggagcggaatgagt
catgaggaggaccagctgattccaaatctttatcggtacattcagccatgggagagtgag
ttcatagactcacagcgggtttgggcagagtatgcattgaagaggcaggaagcgcaggcg
caaaataggcgtctaacacttgaagatttggaagattcatgggacaggggaattccacgc
attaatactctttttcagaaagatcgtcacactttagcatatgacaaagggtggagagtg
cgcacagacttcaagcaataccaagttttaaaacaaaatcctttctggtggacacaccag
agacatgatggaaaattgtggaacttgaacaattatcgaactgatgtcattcaagctctt
ggtggtgttgaaggaattcttgagcataccttgttcaaaggaacgtatttcccaacttgg
gaaggtctcttttgggaaaaggcatctggctttgaggagtccatgaagtataagaagctt
actaatgcacagagatctggtctgaaccaaattcctaaccgtagatttacactttggtgg
tcccccacaataaacagggcaaatgtttatgtgggttttcaagtgcagttagatctaacc
ggcatcttcatgcacgggaagatcccaaccttgaagatttcgctgattcagatattccgt
gctcacctgtggcagaagattcatgagagtgttgttatggacctctgtcaggtcttggat
caggaactggatgctttggaaattgagactgtgcagaaagaaacaatccatccaaggaaa
agttataaaatgaacagctcctgtgcagacgttctcctttttgctgcccatagatggccc
atgtcaaagcctagtcttgtggctgagtcaaaagatgtgtttgaccagaaagcaagcaat
aaatactggatagatgtacagctgagatggggagactatgattctcatgatattgagcgc
tatactagggccaaatttatggattacacaacagacaacatgtctatatatccatctcca
actggggttatgattgggcttgatctagcgtacaatttgcactctgcatttggcaactgg
tttccagggtctaaaccgctgctagctcaagctatgaacaaaataatgaagtcaaaccca
gctttgtatgtcttgagggagcgcataagaaaaggtttgcagttgtattcttcagagcct
acagaaccatatttatcatcacagaattacggggagatctttagcaatcagataatatgg
tttgttgatgatactaatgtctaccgtgtcacaatccacaagacatttgaagggaatctc
acaacaaaacccataaatggtgcaatcttcatattcaatccaagaactgggcagctattt
ttgaaggttatccacactagtgtatgggcaggacagaaacgtctgggccagcttgccaag
tggaaaactgctgaagaagttgcagctcttgtgcggtcgctgcctgtggaagaacaacca
aaacaaattattgtgactcgcaaagggatgcttgatccattggaggttcacttgcttgat
ttccccaacatagttatcaagggaagtgagttgcagctcccattccagtcatgcttaaag
atagagaaatttggtgatttgattttgaaggcgacggaaccacaaatggttttgttcaat
atttatgatgattggctgaagagtatatcatcttacactgcgttctctcggctcattctg
attctccgtgcacttcatgttaataatgagaaggcaaagatgctactcaagcctgacaag
actattgttactgagccgcaccacatctggccttcacttactgatgatcagtggatgaaa
gttgaggttgctttaagggatctcatactctctgactatgccaagaagaacaatgtgaac
acctcagcactgacacaatctgagatacgtgatattattcttggagctgagatcactcct
ccttctcaacaaaggcagcagatagcagagattgagaaacaggccaaagaagcgagtcaa
ctgacagcggtcaccacaaggaccacaaatgtgcatggtgatgaactcattgtcacaacc
actagtccatatgagcaagctgcgtttggttctaaaacagattggcgtgtcagagctata
tctgctacaaatctctatcttcgagtcaatcatatctatgtgaattctgaggatatcaag
gaaactggatacacatatatcatgccgaagaatatcttgaagaagtttatctgtatagct
gatctgcgaactcaaatttctgggtatttgtatggtataagccccccggacaatcctcag
gtcaaggaaatccgttgtattgctatgcccccacagtgggggactcatcaacaggttcat
cttccatcagctcttcctgagcatgatttcctcactgatctggagcctttgggatggatg
cacacacagccaaatgagcttcctcagttatcaccacaggatctcacggctcatgctcgg
gttctggagaacaacaagcaatgggatggagagaagtgcatcatcctgacttgtagtttc
actccaggatcatgctcgttaactgcatataagcttactcctagtggttatgagtgggga
cgtgtcaacaaggacacgggaagcaatcctcatggctacctcccaactcactacgagaag
gttcagatgctcctgagcgaccgcttccttggtttctacatgattcctgataatgggcca
tggaattacaattttatgggagtgaagcatacagtgagcatgaaatatggaatcaagctg
gggacacctcgagagtattaccatgaggaccataggccaacacatttcctggagttcagc
aacctggaggagggtgagaccgctgaaggcgatcgagaggatacattcacttga
DBGET
integrated database retrieval system
