Populus alba (white poplar): 118058240
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Entry
118058240 CDS
T07314
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 14-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118058240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
palz03041
]
118058240
03009 Ribosome biogenesis [BR:
palz03009
]
118058240
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118058240
Spliceosome [BR:
palz03041
]
Complex A
U1 snRNP components
U1 related factors
118058240
Complex B
118058240
Ribosome biogenesis [BR:
palz03009
]
Eukaryotic type
Pre-60S particles
Helicases
118058240
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
118058240
NCBI-ProteinID:
XP_034926838
LinkDB
All DBs
Position
Unknown
AA seq
789 aa
AA seq
DB search
MTAAATASSAGPRYAPDDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSTSAIPQKS
SSSVPITPSVQVEQSSSHRGYSPDDRYGRAHNAGSKADAVTRSSQGSRGTAIQSENVPNG
TANGISARGHGSSSGGSGLTGEAYRRRHEITVTGDEVPPPLTSFEATGFPSEILKEVLKA
GFSSPTPIQAQSWPVALQSRDIVAVAKTGSGKTLGYLIPGFIHLKRCRNDPQLGPTVLVL
SPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKELDRGADIVVATPGRLNDILE
MRRVSLNQVKYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIAADL
LVNPVQVNIGNIDELVANKSITQHVELLAPLEKHRRLEQILRSQEPGSKIIIFCSTKKMC
DQLARNLTRQFGAAAIHGDKSQSERDHVLSQFRTGRSPILVATDVAARGLDVKDIRVVVN
YDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKYASDLIKVLEGANQLVPPEIRAMA
SRGGGAMGRFRRWGSGSGGHDGGRGGHSDFGYGGRDGGRGSWGVSNSSSSRPERGGCEHD
HESQARYDRGYSDGYDKGHNHNQSPDKGSGWGDRSKSLNCDRSRSRSPDRYDRAPPVRSF
HQAMMEKGRASPSNQIQHERSRSPCAAAVGGSSFHKAVMERGRSPCRGSGGSFHKEMMEQ
GRSSSYHAQQERGRSLRSGGINAGPRSGHDGRGFNAGPHSYFGEEEEEGMIPADEDARMP
PDDGLYLSP
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgacggctgcagcaactgcttcttccgcgggtccacgatatgcaccggacgaccctact
ctccccaaaccatggagaggtctagtcgatggcaaaaccggctacctttatttttggaat
cctgagaccaatgttactcagtatgagaggcctagtacctctgctattccgcaaaagtct
tcttcttcagtacccatcactccttctgttcaagtcgagcagtcttcttctcatcgaggg
tatagccctgatgataggtatggaagagcccacaatgctggatcaaaagctgatgctgtt
accaggagtagtcagggttcaagaggtacagcaattcaatccgagaatgtcccaaatgga
acagccaatggaatctctgctagaggacacggatcatcatctggaggaagtggtttgact
ggagaggcttatcgccgccgtcatgaaattactgtcactggagatgaggtgccccctcct
ctaacatcatttgaagctactggctttccttctgagattttgaaagaggtactcaaagca
ggtttctcttccccaactccaattcaggcacaatcatggccagttgctttgcagagtaga
gatatagtggctgttgccaagaccggttcaggaaaaacattaggttaccttattccaggc
tttatccatctcaagcgctgccgtaatgaccctcaactgggtccaactgtgttggtactg
tctccaacaagagagttagcaacacagatacaagatgaagctgtgaagtttggaaagtca
tcaagaatttcctgcacgtgcttgtatggaggagcaccaaagggtccccagttaaaagaa
ctagacagaggagcagatattgtggttgccactcctggtcgcttgaatgacattcttgaa
atgaggagagttagcctcaatcaggttaaataccttgtactagatgaggctgatcgcatg
ctggacatgggatttgaaccccagatacgaaagattgtaaaggaggtgcctgctcgtcgc
cagaccctcatgtacactgcaacttggccaaaggaagttaggaaaattgcagcagatcta
ttggtcaatcctgttcaggttaatatcggcaatatagatgagcttgtggcaaacaagtca
atcacacagcatgtggaattgttggcacccttggagaaacatagacggttggagcagata
ttgcggtcccaagaacctggatcgaagattattattttttgctctacaaagaagatgtgt
gatcaacttgctcgcaaccttacccgccaattcggagctgctgctattcatggcgacaaa
tctcagagtgagagggatcatgttctgagtcagttccgtactgggaggtctccaatactt
gtagccactgacgtagctgctcgaggactggatgtcaaagatatcagagtggttgtcaat
tacgacttccctactggtgtggaagattatgttcataggattgggagaacagggagagca
ggggccactggagtggcctacacattctttggtgaccaagatgcaaagtatgcctcagat
cttatcaaagttttggaaggagcaaatcagctagttcctccagagatacgtgctatggct
tcacgtggtggaggggcgatgggaaggtttagacgttggggctctggttctggtggtcat
gatggaggccgtggtggacatagtgattttggatacggtggaagagatggtggaaggggt
agttggggagtttctaattcctcttcaagcagaccagaacgaggaggctgtgaacatgac
catgagtcgcaggccaggtatgacaggggttacagtgatggatatgataaaggacacaat
cacaatcagagccctgataagggatcaggttggggtgatcgcagtaaaagtttgaactgt
gacagaagccgcagtcggagcccagacaggtatgatagggctccaccagtgcgaagtttt
caccaggcaatgatggaaaagggtcgggcatccccatctaatcaaattcagcatgagagg
tctcgatccccttgtgctgctgctgttggtggtagcagttttcacaaggcagtcatggaa
agaggtcgatccccttgtcgtggtagtggtggcagtttccataaggaaatgatggaacaa
ggtcgatcatcatcataccatgcacagcaggagcgagggagatcactgagaagtggagga
attaatgctgggccacgttctggtcatgatggcagaggatttaatgctggacctcattct
tattttggagaagaagaggaggaaggaatgattccagctgatgaagatgccaggatgcca
ccggatgatggcttgtatctttctccttga
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