Populus alba (white poplar): 118058251
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Entry
118058251 CDS
T07314
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X1
KO
K14962
COMPASS component SWD2
Organism
palz
Populus alba (white poplar)
Pathway
palz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118058251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118058251
03036 Chromosome and associated proteins [BR:
palz03036
]
118058251
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
118058251
Chromosome and associated proteins [BR:
palz03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
118058251
COMPASS/SET1 complex (yeast)
118058251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_Nup120_160
WD40_MABP1-WDR62_1st
WD40_RFWD3
NBCH_WD40
PQQ_3
WD_LRWD1
MIOS_WD40
Ge1_WD40
Methyltransf_13
Motif
Other DBs
NCBI-GeneID:
118058251
NCBI-ProteinID:
XP_034926851
LinkDB
All DBs
Position
17:complement(10341688..10345263)
Genome browser
AA seq
340 aa
AA seq
DB search
MISLTELDDDTVRSMSIGAVFSDFGGKINSVDFHRKDDLLVTASEDDSVRLYDIASAKLL
KTTYHKKHGTDRICFTHHPSSVICSSVYHLDSTGESLRYLSLYDNRCLRYFKGHKDKVVS
LCMSPINDSFMSSSLDHSIRIWDLRVNACQGILHLRGRPTVAYDQQGLVFAVAMEGGAIK
LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTSNNIYVLDAYGGDKRCGFS
LEPSPSTTIEATFTPDGQYVVSGSGDGTLHAWNINMQNEVSCWNSHIGIASCLKWAPRRA
MFVAASTVLTFWIPDSSKPTVDPRPMDTEGAAPSEHVPQQ
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgatatcgcttacagagctcgatgatgatacggtgcgcagtatgtctatcggagctgtt
ttctccgactttggagggaagattaattcagttgattttcatcgaaaagacgatctgtta
gttacagctagcgaggatgattcggttcgtctttacgacattgcaagtgccaaattgctg
aagactacatatcacaagaaacacggtacagatcgaatatgtttcacgcaccaccctagc
tccgttatttgttcctcagtataccatttagattctaccggagaatcattacgttatcta
tcattgtatgataatcgatgtcttcgctacttcaaaggccataaagacaaggttgtttcg
ctctgcatgtctccaattaatgatagcttcatgtccagctctcttgaccacagcattaga
atatgggatcttcgtgtaaatgcctgccagggaattttgcatttacgcggtagacccaca
gttgcatacgaccagcaaggtcttgtctttgccgtggcaatggaagggggtgctattaaa
ctgtttgattcacgatcctatgacaagggtccctttgacacctttttagttggtggagat
acagctgaggtttgtgatattaaattcagcaatgatggtaaatcaatgctattgactacc
acaagtaacaacatctatgttcttgatgcatatggtggagataagcgatgtggcttcagt
ttggaaccatctcccagtacaactatagaggctacttttaccccagatggccaatatgtg
gtatcaggctcaggagatggaaccttgcatgcctggaacatcaacatgcaaaatgaggtg
tcatgctggaacagtcacataggcattgcatcatgcttgaaatgggctcctcgtcgtgcc
atgttcgttgctgcctctactgttctaacgttttggatacctgacagctcaaaaccaact
gtcgatcctcgtcccatggacactgaaggtgcagctccatctgaacatgtacctcaacaa
tga
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