Populus alba (white poplar): 118058292
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Entry
118058292 CDS
T07314
Name
(RefSeq) zinc finger CCCH domain-containing protein 41
KO
K13192
RNA-binding protein 26
Organism
palz
Populus alba (white poplar)
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
palz01009
]
118058292
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118058292
03041 Spliceosome [BR:
palz03041
]
118058292
Protein phosphatases and associated proteins [BR:
palz01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118058292
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
118058292
Spliceosome [BR:
palz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
118058292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
zf_CCCH_4
PHM7_cyt
RRM_Nup35
zf-CCCH
DUF4407
Motif
Other DBs
NCBI-GeneID:
118058292
NCBI-ProteinID:
XP_034926896
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All DBs
Position
17:complement(10369964..10377895)
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AA seq
930 aa
AA seq
DB search
MELKVSTLKTGDLSPADGVSDPEEKEVSDEDDDDRNHKHRRREISSQSLERDSLEPVFTR
PYRKRKPFENGQFYQENDYNSVPLEKGFATKFERIRPGFVSLPRMPVDWNQRIRSNQTFS
GEGLGRGRGRESVSWSQHDSRFSPVDIASQMVHQGQSLFTGRGLANVSNAQSASWNAFGL
FPGIPNGGLDKLHPIGLQGTLRPAVTSSLNMGIPQQRCRDFEERGFCLRGDMCPMEHGVN
RIVIEDVQSLSQFNLPVSLPRAQLVGTTARLGALPTGGPPSATLINSKGMHSKCNKPGIV
NAGLGFNGAHTGSASVNGGDLYDPDQPLWNDSVPETSSALPPHSPKSDEIESMIRIDSFD
HNHVSLHGGVDNECPIRSTGIAVHSQSLNSSVWGKVRASNNRLYVKEKTDLTVSTLNNME
SESKENQGALANVRGTSHQGKQINLENSSAKTIDSPAKTQSDTMHHTPKPSQKALRTLFV
NGIPQKSNKREALLSHFQKFGEVIDIYIPLNTERAFVQFSKREEAEAALRAPDAVMGNRF
IRLWWANRDSIPDGGAGSSNSVSVTPRGVTSTSFPPHLPIGNSGKDNPQMSVSKATAVPP
SVASVPAIDHSKVITTNVPKVPPPMQKLESLEQLKEELRKKQELLDQKRNDFRRQLDKLE
KQATGVRGEVTAEPASKRHKTGITASDIVKAATPRSADPGSGVASPHAEMVDKNKTVENV
VSPVGPPFLMNKYKLDNRPTAFKIISPLPVGLANVATLKEYFSSYGDLSAVELEDEPGDY
DGVGSETLKNCSACVTFTTRRSAERAFLNGKCWQGKNLKFVWLTSSTFSNEPGSGQNSST
PNCLVDTDQSVEKLACSDSQEASASGNGEPENSEINNGTGPIELHEVLRCHSASILGEAE
SQKCEPSPTSISHEKESTKKDPSQTATSEK
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggagctgaaagtttcaacactaaagacaggtgatctttctcctgctgatggcgttagc
gatcctgaggagaaggaagtcagtgatgaggatgatgatgatcgcaaccataagcatcgt
agacgggagataagttctcaatctttggagagagattctctggaaccagttttcacaagg
ccatacaggaagcgtaaaccatttgaaaatgggcaattttaccaagaaaatgactataat
tctgttcctcttgagaaaggctttgccacaaagtttgaaagaatacgacctggctttgtg
tcattacctcgaatgcctgtggattggaatcaaagaatcaggtcaaaccaaacattttct
ggagagggtcttggcaggggaagaggaagggagtccgtttcttggagccaacatgattct
aggttcagcccagttgacattgcttctcaaatggttcaccaggggcagagcctctttact
gggaggggtttggcaaatgtttcaaatgcgcagagtgcatcctggaatgcatttggttta
tttccaggaataccaaatggtggcctggataaactccatcccattggtttgcaaggaact
ctcagaccagcagtaacttcttcattgaacatgggcattcctcaacaaaggtgtagagac
tttgaggagcgtggattttgtctaagaggggacatgtgtccaatggagcatggtgtcaat
cgtattgtcattgaagatgttcagagcctttcacagtttaatctccctgtttcacttcca
cgtgcccaactagttggaacaactgctagactgggggctctaccaactggcggtccccct
tcagccacgttgataaatagcaaaggaatgcatagcaaatgtaacaagcctggaatagtc
aatgctggattgggcttcaatggtgcacacactggctctgctagtgtgaatggaggagac
ttgtatgatccagatcaacccctgtggaatgacagtgttcctgaaacttcaagtgcactc
ccaccacattcacctaaaagtgatgaaattgaatccatgataagaattgattcttttgat
cacaatcatgtcagtttacatggtggtgttgataatgaatgcccaattagaagcactggg
attgctgtgcattcacagagtttgaattcttctgtttggggtaaagtcagggcttcgaac
aatagattatatgtgaaagagaaaaccgatttgactgtaagtacgttaaataatatggag
agtgagtccaaggaaaatcagggtgcattagccaatgttcgtggtacttcccatcaagga
aaacaaattaatcttgagaattctagtgcaaaaaccatagattcaccggccaagacacaa
agcgacaccatgcaccacacaccaaaaccatctcaaaaggcactgcgtacactatttgtc
aatggcattccacagaaaagcaacaaaagagaggctctactttctcattttcaaaaattt
ggagaggttattgacatttatattccattgaacactgagcgagcatttgttcaattctca
aaaagggaagaggcagaagctgctctaagggcacctgatgctgtaatgggcaaccgtttt
atcaggctgtggtgggctaatcgtgatagcattcctgatggtggtgctggcagtagcaat
agtgtatctgtcacaccccggggtgtgacatctacttcatttccaccccatctgcctatt
ggtaacagtggaaaagataatcctcagatgtccgtttcaaaggctactgctgttcctccc
tctgttgcttctgtccctgccatcgatcactctaaggtcatcacaacaaatgttccaaag
gttccacctcctatgcagaagctagagagtttagaacaattgaaggaggagctgcgcaag
aagcaggagctgctggatcagaagcggaatgactttcggcgtcagctggacaagcttgag
aaacaagctacaggggtcaggggtgaggtaacagcagagcctgcttcgaagagacacaaa
accggaataacagcatctgatattgtcaaagctgctactccaaggtctgctgatccaggt
tctggtgttgcgtccccacatgccgaaatggtggataagaacaaaacagtggagaatgtt
gtgtcacctgttgggcctccttttctgatgaataaatacaagttggacaaccgacctaca
gcattcaaaattatttcacctttaccagttggtttggcaaatgttgctactttaaaggaa
tacttctcatcatatggcgatctttctgctgtggaactagaagatgagcctggtgattat
gatggtgttggatctgagacgctgaaaaattgttcagcttgtgtgactttcacaactcgc
cgatcagctgagagggctttcctaaatggtaaatgttggcaaggcaagaatttgaagttt
gtgtggctgacatctagcacttttagcaatgagccaggaagtggacaaaattcatctacg
cccaattgtcttgtagatactgatcagtctgttgaaaaattagcttgttcggattcccag
gaagcttctgcatcaggaaatggagaacctgaaaattcagagataaataatggtactggc
cccatagagttgcatgaagttctccggtgccattcagcctcaatattaggtgaggcagag
tcacagaaatgcgagcctagtccaacatcaatatcacatgagaaagagtcaacaaaaaag
gaccctagtcaaactgcaacgtcagagaaatag
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