Populus alba (white poplar): 118058408
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Entry
118058408 CDS
T07314
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
palz
Populus alba (white poplar)
Pathway
palz04120
Ubiquitin mediated proteolysis
palz04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
118058408
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
118058408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
palz04121
]
118058408
Enzymes [BR:
palz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118058408
Ubiquitin system [BR:
palz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
118058408
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
118058408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_DCAF4
Beta-prop_EIPR1
EIF3I
WD40_MABP1-WDR62_2nd
zf-C3HC4_2
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
zf-C3HC4
Beta-prop_HPS5
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_RFWD3
zf-C3HC4_3
zf-RING_2
WD40_like
zf-RING_UBOX
Beta-prop_WDR75_1st
zf-C3HC4_4
zf-RING_5
Beta-prop_DCAF12
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
U-box
WDR90_beta-prop_4th
zf-rbx1
DUF1664
Beta-prop_IFT122_2nd
Baculo_p24
Prok-RING_4
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
118058408
NCBI-ProteinID:
XP_034927005
LinkDB
All DBs
Position
4:362757..367229
Genome browser
AA seq
602 aa
AA seq
DB search
MGGESSMGALVPSVNSEATTSKMQPPTEELDKDMLCPICMQIIKDAFLTSCGHSFCYLCI
TTHLRNKNDCPCCSHYLTNNHIFPNFLLNKLLERTYARQAAKNASPYEHLRQALQQGCEV
SVKELDGLLTLLAEKKRKMEQEEAERNMRILLDFLCCLRKQKLDELNEIQTDLQYIKEDI
NAVERQRIELCRAKERCSLKLRMFADDPNTQFVTQSGPVASKKKWAQAQFNDLQECYLQK
RRNWVRQAYKEEEKDTDIMNGEGYNPGLEDFQSVLTNFTRYSRLRAVAELRHGDLFHSAN
IVSSIEFDRDDELFATAGVSRRIKIFEFSSVMNEPADVHCPVVEMSTRSKLSCLSWNKYT
KNHIASSDYEGIVTVWDVTTRQSIMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKIWC
TQQEASVLNIDMKANICSVKYNPGSSIHVAVGSADHHIHYYDLRNISQPLYVFSGHRKAV
SYVKFLSSNELASASTDSTLRLWDVRDNLALRTFRGHTNEKNFVGLTVNSEYIACGSETN
EVFVYHKAISKPAAWHRFSTDLENGEEDAGSYFISAVCWKSDSPTILTANSQGTIKVLVL
AE
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgggtggagagagctctatgggggcacttgtcccctctgtgaattctgaggcaacaacc
tccaaaatgcaaccaccaacggaggagttagacaaggatatgctctgtcctatttgcatg
cagatcattaaggatgcttttctcacttcctgtggacatagcttctgttacctgtgtatt
actactcatttaagaaacaagaatgattgtccttgttgttctcattacctcaccaacaac
catatctttcctaattttttgctcaataagttattggagagaacttatgctcgtcaagca
gccaagaatgcatcaccttacgaacaccttcgccaggcattacaacagggttgtgaagtc
tcagttaaagagctagatggccttttgaccctccttgcagagaagaagcgaaagatggag
caagaagaagcggagagaaatatgcggattttgcttgacttcttgtgctgcctcaggaag
caaaagcttgatgagctcaatgagattcaaacagacctgcagtacattaaggaggacata
aatgctgtagagaggcaaaggatagagttatgcagggcaaaggaaagatgctcactaaaa
cttaggatgtttgctgatgatccgaatactcagtttgttactcaatcaggaccagttgca
tctaaaaagaaatgggcccaagcacagttcaatgatttgcaagaatgttacttgcaaaag
cggcgaaattgggttagacaagcatacaaagaggaagaaaaggatacagatattatgaat
ggagaaggatataatccaggtcttgaggatttccaatctgtgctgaccaattttactcga
tacagtcgattgagggccgttgctgaactgagacatggtgaccttttccactctgctaat
attgtgtctagcatagaatttgatcgtgatgatgaactgtttgctactgctggagtttct
aggcgcattaagatttttgagttttcctcggtgatgaacgaaccggcagatgtgcattgt
cctgttgtggaaatgtccacgcgatctaaacttagttgcttaagttggaacaagtatacg
aaaaatcatattgctagcagtgattatgagggtatagtaactgtttgggatgtaactact
cgccagagcataatggaatacgaggagcatgaaaagcgagcttggagtgttgatttttca
cggactgaaccttcaatgcttgtatctggtagcgatgactgcaaggtcaaaatttggtgc
acacagcaagaagcaagtgttcttaacattgatatgaaggcaaatatttgttctgtcaag
tataatcctggatccagcattcatgtggcggtgggatctgctgatcatcatattcactac
tatgacttgagaaacattagccaaccgctttatgtatttagcgggcatcggaaagctgtt
tcatatgtgaaattcctgtctagcaacgaactggcgtctgcatctacggacagcacattg
cgcttatgggatgtaagggataatttagcattgcggacatttagaggccatacaaatgag
aagaattttgtgggtctcacagtgaacagcgagtacattgcttgcggcagcgaaacaaac
gaagtgtttgtgtatcacaaggctatctctaaacccgcagcttggcatagatttagtacg
gatttggagaacggtgaggaagatgctggatcgtatttcataagcgctgtgtgttggaag
agtgatagccccacaatactaaccgcaaacagtcaaggaaccattaaagtgcttgttctt
gctgaatga
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