Populus alba (white poplar): 118058418
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Entry
118058418 CDS
T07314
Name
(RefSeq) SWI/SNF complex subunit SWI3C isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
palz
Populus alba (white poplar)
Pathway
palz03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118058418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palz03021
]
118058418
03036 Chromosome and associated proteins [BR:
palz03036
]
118058418
Transcription machinery [BR:
palz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118058418
Chromosome and associated proteins [BR:
palz03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
118058418
PBAF complex
118058418
GBAF(ncBAF) complex
118058418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
FAM92
ZZ
Motif
Other DBs
NCBI-GeneID:
118058418
NCBI-ProteinID:
XP_034927044
LinkDB
All DBs
Position
14:complement(13472640..13479154)
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AA seq
802 aa
AA seq
DB search
MPASPSFPSSDGRGKWKRRKRGDSQITRKPPKHHHQEEPEEPEDDDDAVEADDHNNNIVY
REDSDDPTPHQQPNGPDPNPQETEVLTDGGVRICDFPPVTRLAVNRPHASVMAIVAAERF
NFAGESSNRGQLAVNLENVSYGQLQAVSAVTAESVGSDLERSDGGNSGYVVTPPQIMDGK
GVVKRFWSRFHVVPMHSDWFSPLSVNRLERQVVPHFFSGKSSDHTPEKYMECRNRIVAKY
MENPEKRLTVSDSQGLVVGIDIEDLTRIFRFLDHWGIINYCAAPPNCESWSGGSYLREDP
NGEVHVPSASLKSIDSLIQFDKPRCRLKAADVYSSFSCHGDDFSDLDNRIRECLSENCCN
CCSQPLPSVLYQSQKEVDILLCSDCFHEGRFVTGHSSLDFIKVDSTKDYGDIDGENWSDQ
ETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPVEDGLLENIEVPRMSKPPSPS
SRDDSRRLHSSSNGSCLQSADAENRLPFANSGNPVMALVAFLASAVGPRVAAACAHASLA
SLSEDNRMDSERLHCREGGFHGEVANSIQQKEDGQHGSRGQNGAEVAPLSSEKVKTAAKA
GLAAAATKAKLFADHEEREIQRLSANIINHQFLIWLQLKRLELKLKQFAEVETFLMRECE
QVEKTRQRFAAERVRMLSTRIGPAGVTSQVNPAGVAPSMVNNNVGNNRQQVMPSSSSQPS
IPGYGNSNPTHPHNNQQVHPHMSYLQRGHPQPMFPLGPRLPMAAIQPSSSAPSNAMDNAP
GNSQPNLNQMPRSVSGPSSGLG
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttccccttctttcccttcctcagatggtaggggcaaatggaaaaggcgaaag
cgaggagactctcaaatcactcgaaaaccaccaaagcaccaccaccaagaagaacctgag
gaacccgaagacgacgacgacgcggttgaggcagacgaccataacaataacatcgtctac
agagaagattccgatgacccgaccccacatcaacaacccaacggacccgatccaaaccct
caagagaccgaggttttaactgacggcggggtccgcatatgcgatttccctccggtcact
cggcttgctgtgaaccgccctcatgcgtctgtgatggcgattgtggcggccgagaggttc
aattttgctggagaaagcagtaatagaggccaattagctgtgaatctggagaatgtatcg
tacgggcagctgcaggcggtgtctgctgtgacagcggagagtgttgggagtgatttggag
aggagtgatggagggaattcggggtatgtagtgacgccgccgcagattatggatggaaag
ggtgtcgtgaagaggttttggagtagatttcatgtggttccgatgcattcagattggttt
tcaccgctctcggttaatcgactggagagacaggtggtgccacattttttctctggaaaa
tcttcagatcacacaccagagaaatacatggagtgtagaaaccgcattgttgctaaatat
atggagaatccagagaagaggctcacagtttctgattctcaaggattggtagtcggtatt
gacattgaagatttaactcgaatttttagatttcttgatcattggggaattatcaactac
tgtgcagctccaccaaattgcgaatcctggagtggggggtcctatttaagggaggatcca
aatggtgaggttcatgtaccgtcagcttccttaaagtctattgatagtttgatccaattt
gacaagcccagatgtaggctcaaggcagctgatgtttattcatcattttcatgtcatggt
gatgatttctctgacctggacaacagaattcgagagtgcttatctgaaaattgctgcaat
tgttgttctcagcctcttccctctgttttgtaccagtcacaaaaggaggttgatatacta
ctatgctctgattgcttccatgaggggagatttgtgactggtcattcaagtttagatttt
attaaggtagattcaacaaaagattatggtgatatagatggagaaaattggagtgatcag
gaaacattactactccttgaggcaatggagatttacaatgagaactggaatgaaattgca
gaacatgttggaaccaagtcaaaagcacaatgcatccttcactttctgcgtctgcctgta
gaggatggcctgttggaaaatattgaagttccaagaatgtccaagccacccagtccatct
agtagagatgatagcagaagactacactcaagttcaaatggatcctgcctccaaagtgcc
gatgctgaaaataggctacctttcgcaaattctggcaatccagttatggcattggttgct
tttttggcctctgctgttggaccaagagttgctgcagcctgtgctcatgcatctttggca
tcattgtccgaggataacaggatggattcagagagattacattgtagagaaggtggtttt
catggagaagttgcaaattcaattcaacaaaaagaagatggccagcatggttcacggggt
caaaatggggccgaggttgctcctttgtcttctgaaaaagtaaaaactgctgccaaagct
ggccttgctgctgcagcaacaaaggctaaactgtttgctgatcatgaggagcgggaaatt
cagagactatctgccaatatcataaatcatcagtttttgatatggttacagttgaagaga
ctggagcttaagctgaagcagtttgctgaagtggaaacctttctaatgagagagtgcgag
caagtggagaagacaaggcaacggtttgctgctgagcgggtccgcatgctatctacccgg
ataggacctgccggagtcacttcacaagtgaacccagctggtgttgctccttcgatggtt
aacaataatgtgggcaacaataggcagcaggtgatgccttcctcctcttcacaaccaagc
attccaggatatggcaacagtaatccaacccatccacacaacaatcaacaagtccatcct
cacatgtcatatttgcaacggggacatccacagccaatgtttccattagggccgaggctg
cccatggcagctatacagccatcctcgtcagctccatcgaatgccatggacaatgcccct
ggaaattcacagcctaacctcaatcaaatgccgagatctgtgtcaggccctagttctggc
ttaggttga
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