Populus alba (white poplar): 118058971
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Entry
118058971 CDS
T07314
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
palz
Populus alba (white poplar)
Pathway
palz03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
118058971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palz03021
]
118058971
03019 Messenger RNA biogenesis [BR:
palz03019
]
118058971
Transcription machinery [BR:
palz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
118058971
RNA polymerase I system
118058971
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
118058971
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW4_SPT5
Spt5-NGN
KOW
KOW6_SPT51-2
KOW2_Spt5
KOW7_SPT5
KOW5_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
DUF4438
ProQ_C
KOW6_SPT5
Motif
Other DBs
NCBI-GeneID:
118058971
NCBI-ProteinID:
XP_034927674
LinkDB
All DBs
Position
9:10250033..10258210
Genome browser
AA seq
1050 aa
AA seq
DB search
MARRRDEDDDLEDEEYEEQEEQLMDEEEEYEEEEEEDRGASIKKRRRSDFIDDIAEEEDE
EEEDDDDDEDYGGGGGGGGGGGGGRKQKGKKRRGSEFFDDIAQVASDDEEEEEDAEDDFI
VDDHGADLPDEAGGRRMHRPLLSREDDQEDVEALERSIQARYAKSMHSEYDEETTEVEQQ
ALLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSVVALDHLKNYIYIEADK
EAHVREACKGLRNIFGQKIMLVPIREMTDVLSVESKVIDLSRDTWVRMKIGTYKGDLAKV
VDVDNVRQRVTVKLIPRIDLQALANKLEGREAPKKKAFVPPPRFMNVDEARELHIRVERR
RDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIKPSFDELEKFRSPGENGDGDVASL
STLFANRKKGHFMKGDAVIVVKGDLKSLKGWVEKVDEENVHIRPEMKGLPKTLAVNEKEL
CKYFEPGNHVKVVSGTHEGVTGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGV
TKIGDYELHDLVLLDNMSFGLIIRVESEAFQVLKGVTERSEVALVRLREIKCKIEKKTNV
QDRYKNTVSVKDVVRIIDGPCKGKQGPVEHIYRGVLFIYDRHHLEHAGYICAKSHSCVVI
GGSRSNGDRNGDSYSRLGSFKTPRVPPSPRRFPRGGPPFDSGGRNRGGRGGHDALVGTTI
KVRQGPFKGYRGRVVDIKGQFVRVELESQMKVVTVDRSHISDNVVVSTPYRDTPRYGMGS
ETPMHPSRTPMRSHMTPMRESGATPIHDGMRTPMRDRAWNPYAPMSPPPRDNWEDGNPGS
WGTSPQYQPGSPPSGTYEAPTPGSGWASTPGGNYSEAGTPRDSSSAYANAPSPYLPSTPG
GQPMTPSSASYLPGTPGGQLMTPGTNGLDMMSPVIGGDGEGPWFIPDILVTVHRTADESA
VGVIREVLQDGSCKIVLGAHGNGETITALPSEIEMVVPRKSDKIKILGGAHRGATGKLIG
VDGTDGIVKLEDTLDVKILDMVILAKLAQM
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtcgaagagacgaagacgacgaccttgaagatgaagagtacgaggagcaggaa
gagcaactgatggatgaagaagaggagtatgaagaggaagaagaagaggatagaggagcg
tcgattaagaagagacggagatcagatttcattgatgatatcgcggaggaggaggatgag
gaagaagaagatgatgacgatgatgaggattatggtggtggaggtggaggtggaggtgga
ggtggaggtggtaggaagcagaaggggaagaagcggcgtggttctgagttttttgatgat
attgcgcaagttgccagtgatgacgaagaagaagaagaagatgccgaggatgattttata
gttgatgatcatggagctgatttacctgatgaggctggtggtagaaggatgcatcggcca
ttgctgtcacgtgaggatgatcaagaagatgttgaagcgcttgagagaagtatccaagct
agatatgcaaagtcaatgcactcggaatatgatgaagagactacggaagtggagcaacaa
gctcttttgccatccgttcgtgatccaaaattatggatggtcaagtgtgcaattggccgg
gaacgggaaacggctgtttgtttgatgcaaaaatacattgataaaggatctgagttgcaa
attcggtctgttgttgctcttgatcatcttaaaaactatatatatattgaagcagacaaa
gaagcccatgtgagagaggcttgcaaaggcttgcgcaatatttttgggcagaaaatcatg
cttgtcccaatcagagaaatgactgatgttctttcagttgaaagcaaagtaattgatctt
tccagggacacatgggtcaggatgaagattgggacttacaaaggagaccttgccaaagtt
gtagatgtagacaatgtgcggcagagagttacagtaaagttaattccaaggattgactta
caggctcttgcaaacaaactggaaggcagagaagcaccaaagaagaaggcatttgtacct
cctccacgttttatgaatgttgatgaagctagggaattacatattcgtgttgagcgaaga
agagatccgatgactggtgattattttgaaaatattggcgggatgctttttaaagatggt
ttcttgtataaaactgtatcaatgaagtcaattagtgctcagaacattaagccgtcattt
gatgaacttgagaagtttcgatcacctggagagaatggagatggtgatgttgccagtttg
tcaaccttgtttgcaaacagaaagaagggtcattttatgaagggtgatgcagttattgtt
gtcaagggagatctgaaaagtctaaagggatgggttgagaaagttgatgaagaaaatgtt
catattagacctgaaatgaagggtcttccgaaaacacttgcagtgaatgaaaaggaacta
tgcaagtattttgaacctggcaatcacgtgaaggttgtttcgggcacacatgaaggtgtc
actggcatggttgttaaggttgagcagcatgtgctcattattctgtctgatacaacaaag
gaacacatccgtgtatttgctgatgatgttgtggaaagttctgaggtaacgacaggtgtt
accaaaattggggactatgagcttcatgatcttgtactattggacaatatgagctttggt
ttaatcattcgtgtagaaagtgaagcctttcaggttctcaagggagttacagagaggtct
gaggttgcacttgttagactaagagagatcaaatgcaaaattgagaagaaaactaacgtg
caagatcggtacaagaacacagtatcggtgaaagatgttgttaggatcattgatggtcct
tgcaaagggaaacaaggtcctgtagagcacatatatagaggagtcttgttcatctatgat
cggcatcaccttgagcatgctgggtatatttgtgctaaatcccactcatgtgttgtcatc
ggaggatcacgttctaatggagatagaaatggtgattcctactcaaggttgggcagtttt
aaaactccccgggtacccccttcaccaaggagatttcctagaggaggtcctccattcgac
tctgggggaagaaatagaggtggaaggggagggcatgatgctttggttggtaccacaata
aaggtacgacagggccctttcaagggctaccgtggtcgtgttgtagatatcaaaggtcaa
ttcgttagagttgaactggaatcacaaatgaaggttgttacagttgatcggagccacatc
tcggataatgtggttgtttcaactccataccgcgatacacctcgatatggtatgggaagt
gaaaccccaatgcatccttctcggactccaatgcgttcacacatgacaccaatgagagaa
tcaggagcgacacctattcatgatggcatgaggacacctatgcgtgatcgagcctggaat
ccttatgcaccaatgagtcctcctccaagggataattgggaagatgggaaccctggttct
tggggaaccagtccgcagtatcagccaggaagccctccctctggaacatatgaagctcca
actcctggttcaggctgggctagcactcctggtggtaattatagtgaagctggaacacca
agagatagcagttctgcatatgccaatgctccaagcccatacctgccatcaactcctggt
ggccagcctatgacacccagttcagcgtcctatctccctggcactcctggagggcagcta
atgacacccggaactaatggtcttgatatgatgtctcctgttataggtggagatggtgaa
ggaccatggttcataccagacatattggttaccgttcaccggactgcagatgaatctgca
gttggtgtcatcagagaggtgcttcaggatggctcttgtaaaatagtccttggggctcat
ggcaacggagaaacgataactgctcttcctagtgaaattgagatggtggtgccaaggaaa
tcagacaagatcaagatcctgggtggtgcacatcgtggtgctactggcaagttaattggc
gttgatggcactgatggaattgtaaagttggaggacactcttgatgttaagatattagac
atggttatactggcaaaacttgcacagatgtga
DBGET
integrated database retrieval system
