Populus alba (white poplar): 118059891
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Entry
118059891 CDS
T07314
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
palz
Populus alba (white poplar)
Pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118059891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palz03021
]
118059891
03041 Spliceosome [BR:
palz03041
]
118059891
03036 Chromosome and associated proteins [BR:
palz03036
]
118059891
Transcription machinery [BR:
palz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
118059891
Spliceosome [BR:
palz03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
118059891
Complex B
118059891
Complex C
U2 SnRNP specific factors
118059891
Chromosome and associated proteins [BR:
palz03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
118059891
TFTC complex
118059891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
118059891
NCBI-ProteinID:
XP_034928780
LinkDB
All DBs
Position
10:19417718..19423052
Genome browser
AA seq
1213 aa
AA seq
DB search
MYLYSLTLQRATGIISAINGNFSGGKAQEIVVARGKVLDLLRPDENGKLQTVLSVEIFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKERNVLDKIHQETFGKSGCRRIVPGQYL
AVDPKGRAVMIGACEKQKLVYVLNRDTVARLTISSPLEAHKSHTICYSVCGVDCGFDNPI
FAAIELDYSEADQDSTGQSASEAQKNLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGG
GDGPSGVLVCVENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHKQKSMFFFLLQ
TEYGDIFKVTLDHENDKVKELKIKYFDTIPVTSSMCVLKSGFLFAASEFGNHALYQFQAI
GEEEDVEASSATLMETEEGFQPVFFQPRGLKNLVRIDQVGSLMPIMDMKVANLFDEETPQ
IFSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVYDEFDAYIVVSFNNAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQIHPNGIIHIREDGRINEWRTPAKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRVLSLDPDDCMQILSVQSVSAPPESLLFLEVQASIGGEDGADHPASLFL
NAGLQTGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSINVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCAEGVVSVAGDALRIFTIERLGETFNETAIPLRYTP
RKFVLQPKRKLLVIIESDQGAYTAEEREAAKKECFEASGMGENGSASAEQMENGDDDDKE
DPLSDEQYGYPKAESDKWVSCIRVLDPRSAATTCLLELQDNEAAFSLCTVNFHDKEHGTL
LAVGTAKGLQFWPKRSLVAGFLHIYKFVDDGKSLELLHKTQVEGVPLALCQFQGRLLAGI
GSVLRLYDLGKKRLLRKCENKLFPNTIVSIHTYRDRIYAGDIQESFHFCKYRRDENQLYI
FADDSVPRWLTSSYHVDFDTMAGADKFGNIYFARLPQDVSDEIEEDPTGGKIKWEQGKLN
GAPNKVEEIVQFHIGDVVNSLQKASLIPGGGECIMYGTVMGSVGALLPFTSRDDVDFFSH
LEMHLRQDHPPLCGRDHMSYRSAYFPVKDVIDGDLCEQFPTLPLDAQRKIADELDRTPGE
ILKKLEEVRNKII
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagcctcactctccaacgagccactggaatcatctccgccataaacggc
aacttctccggcggcaaagcacaagaaatcgtagtcgctcgcggcaaagtcctcgatctt
ctccgccctgacgagaacggtaagctccaaacagttctatctgttgaaattttcggtgca
attcgctcattagctcagtttagactaactggtgctcaaaaagattatattgttgttggt
tctgattcgggtaggattgtaattttagaatataacaaggagagaaatgtccttgacaaa
attcatcaagaaacttttggaaaatccggttgtcgccggattgttccgggtcagtatttg
gcagttgatccgaagggaagagctgttatgattggtgcttgtgagaaacagaagttagtt
tatgttttgaatagagatactgttgccaggttaaccatttcttcacctttagaggcgcat
aagtcgcatactatatgttactctgtatgtggtgttgattgtgggtttgataatcctatt
tttgctgccattgagttggattattcggaagcagatcaggattcgacagggcaatccgcg
agtgaagcacagaagaatttgactttttacgagcttgatttggggcttaatcatgtctcc
aggaaatggtctgagcaggttgataatggcgctaatatgcttgttacggtacctggaggt
ggtgatggtccaagtggggttttagtttgcgtggagaattttgtgatttataagaatcaa
gggcatcctgatgtgagggctgtgattcccaggcgtgctgatttgcctgctgaacgtggg
gttttgatagtctctgcggctacacataagcagaaatcaatgtttttctttttgttgcag
acggagtatggtgacatttttaaggttacgttggatcatgagaatgacaaggtgaaggaa
ttgaagattaagtattttgatacgatcccagtcacatcctcgatgtgtgttttgaaatca
gggtttttgtttgctgcatcagagtttgggaatcatgcgttgtatcagtttcaggccatt
ggggaggaagaggatgtggaggcctcatctgctactttgatggaaaccgaggaaggcttc
cagcctgtgtttttccagccacgagggttaaagaatcttgttaggattgaccaggttggg
agcttgatgcctattatggacatgaaggttgctaatctttttgatgaagaaaccccacag
atattttcactttgtgggcgtggacctcgttcatcattgaggatattgaggcctggtttg
gccattagtgagatggctgtgtcacagcttcctggtgtaccgagtgcagtttggactgtg
aaaaagaatgtttatgacgagtttgatgcgtatattgttgtgtcttttaacaatgcaact
cttgtgctttcaattggagaaacagttgaggaagttagtgatagtgggtttcttgatacc
acaccttcacttgccgtttctttaattggtgatgattctttgatgcaaattcacccaaat
ggcataatacatatcagggaagatgggcgtattaatgagtggagaacccctgcaaagagg
acaattgtgaaagttggctccaatagacttcaagtggttattgctttaagtggaggggag
cttatatattttgaggtggatatgacaggtcagctgatggaagtggagaagcatgagatg
tcaggagatgtggcctgtttggacattgcccctgttccagaaggaagacagaggtctcgt
ttcctagcagttggttcgtatgataacaccatccgtgtcttgtctttggatcctgatgac
tgtatgcagattctgagtgtgcaaagtgtttcagcacctccagaatccctcctctttctt
gaggttcaggcatcaattggtggggaagatggtgctgatcaccctgccagtcttttcctt
aatgctggtttgcagactggggttctattcaggacagtggtggacatggtgacaggccag
ctttctgactctcgttcccgatttttgggtttgagggccccaaaacttttttccattaat
gtgagaggtcgacgtgcaatgttgtgcttatctagtcgaccctggcttggttatattcac
caagggcattttctgttaactcccctttcatacgagactcttgaatatgctgcctcattc
tcatctgatcagtgtgcagaaggtgttgtttctgtcgccggggatgcattgaggattttc
acaattgagagactgggagaaacatttaatgaaactgcaatacctctaagatacactcca
agaaagtttgtgcttcaacctaagcggaaattgttggtgattattgagagcgatcaagga
gcatatacggcagaggagcgtgaagcagcaaaaaaggagtgttttgaagcttctggaatg
ggggaaaatggaagtgccagtgctgagcaaatggaaaatggtgatgatgatgataaagaa
gaccccctatctgatgagcagtatggctatccaaaggctgagtcagacaagtgggtttct
tgcattagagtccttgacccaaggtctgctgctaccacttgcttgctggagcttcaagac
aatgaagctgcatttagcttgtgcactgtaaatttccatgacaaggagcacggaactctc
ttagctgttggtacagccaagggactgcagttttggcccaaaagaagcttggttgctggg
ttccttcacatttataagtttgtggatgatggcaaaagcctagaacttttgcataagact
caagtagaaggtgttccacttgctttatgccagtttcagggaagattacttgctggaata
ggatcggtgctgagattgtatgacttggggaaaaagaggttgcttaggaagtgtgagaat
aagctgttccccaacaccattgtttctatccacacctaccgtgatcggatttatgcgggt
gacattcaagaatcatttcatttctgcaagtacaggcgggatgaaaatcaactgtatatt
tttgctgatgatagtgtcccaagatggcttacatcatcataccatgtagattttgatacc
atggctggtgcagacaagtttggaaatatctactttgcaaggctgccacaggatgtctct
gatgagatagaagaagatccaactggtggaaagataaagtgggagcaggggaagcttaat
ggagctccaaacaaggtagaggagatagtgcagtttcatatcggtgatgtggttaacagt
ttgcagaaggcatctctaattccaggtggtggcgagtgcatcatgtatgggacagtgatg
ggaagtgttggggccctacttccattcacctctagagatgatgttgacttcttttcacac
ttggagatgcatttgagacaagaccacccacctttgtgtggaagagatcatatgtcatat
aggtctgcttattttcctgttaaggatgtgattgatggggatctatgcgagcagttccca
actctgccccttgatgcacaaagaaaaattgctgatgagctggacagaactcctggggag
atactcaagaaacttgaagaagttcgaaacaagatcatctga
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integrated database retrieval system
