Populus alba (white poplar): 118059902
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Entry
118059902 CDS
T07314
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
palz
Populus alba (white poplar)
Pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118059902
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
palz03041
]
118059902
Spliceosome [BR:
palz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
118059902
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
CD34_antigen
Motif
Other DBs
NCBI-GeneID:
118059902
NCBI-ProteinID:
XP_034928792
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Position
10:19501704..19507365
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AA seq
847 aa
AA seq
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MDRSSKRTRDDRDRDHHKHRSRDDKHRDSSDSHHHRSERESHHRDHHKSSRRDDTKRERS
REREESVDRRERSHDHKSSSSSRREDRERSYDEREEREGSRERKREKREREIEEEDYFER
KKRKERGGSEDRVVVDKEKRSRRRFGEKVKEEDISIDNNNNGNSFENVKSVDLSEVRVKE
EVNGQPTGGGSGSTTENGGVSAANGATLATFTKTPSNLPETSVAPVHPLPTKVSSISNTN
ENKGVSIARSHEVPGKSSTDGTTSAAGKSGNLSLDALAKAKKALQMQKELSEKLKKLPLS
SKGNKSSGGSLQGPLSSATITTAVSVEAMPSSSTSSTSTMVSVKPPATGMAPPPDITSMP
NYEAVKRAQELAAKMGFRQDPEFAPLINFFPGQLPAEVSALQKPSKAPVLRVDALGREID
EHGNVVNVTKPNNLSTLKVNINKQKKEAFQILKPELDVDPESNPYFDAKMGINKNKFLRP
KRMTFQFVEEGKWLKEAEIMKLRNQFGEEREKDMKARQALHAKAKAAPDINPNLIEVSER
VTTKAKPKDPIPDIEWWDVPLLTSGTYGDDVDDLMTQRRLKLEKITIYVEHPRPIEPPAE
PAPPPPQPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEA
TQDPTRLEKEIRTAAAEREQAHIDRNTARKLTPAERREKKERKLFDDPNTVETIVSIYRI
NDLSDKKTRFKVDVNAHENRLTGCTVITEGICVVVVEGGSKSIKRYGKLMLRRINWAEAV
NEDEGGDNDEKPMNKCVLVWQGSVAKPNFHRFSLHECVTEAAARKYFADAGVAHYWDLAV
NFSDDQM
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggatcgctcctccaagcgcacacgtgacgaccgtgaccgtgaccaccacaaacaccga
tcacgagacgataagcaccgagactcctccgattctcaccaccaccgatcagagagagaa
tctcaccatcgagaccatcacaaatcatctaggcgcgatgatactaagcgcgaaagatct
cgcgagcgagaagagagtgtagataggcgagagagatctcacgatcacaagtcatcttcc
tcatcgaggcgtgaggacagagagagatcgtatgatgagagagaggagagagaagggagt
agagagagaaagcgcgagaagagagagagagaaattgaagaggaggattattttgagaga
aagaagagaaaagagagaggagggagtgaagatagggttgttgttgacaaggagaagagg
agtagaagaagatttggcgaaaaagtgaaagaagaggatattagtattgataacaataat
aatggtaatagttttgagaatgtgaagagtgtggatttgagtgaggttagagtgaaggag
gaagtgaatggtcagccaactggtggcggcagtggcagcaccacagaaaacggtggtgtt
tcggctgcaaatggtgctactctggcaactttcaccaagacaccaagcaatttgcctgag
acctctgtggcacctgtccacccccttcctaccaaggtatcttcaatttcaaacacaaat
gaaaataagggagttagtattgccagatctcatgaggttcctggaaaatctagtacagat
gggacaacttcagctgctgggaaaagtggaaatctatcacttgatgctttagcgaaagct
aagaaagccttacaaatgcagaaggaactgtcagagaagctgaagaagctacccctgtcg
agtaagggtaataaaagttcaggtggtagcttacaaggtccattgtcatcagcaaccatt
actactgctgtttcagtagaggcaatgccaagttcatccacctcatctactagtactatg
gtgtctgtaaagccacctgcaactggcatggcacctccgcctgatattactagcatgccc
aattatgaagctgttaaacgtgcccaggaactcgctgctaaaatgggatttcgccaggac
cctgagtttgctcctcttataaactttttccctggtcagttgccagcagaagtctctgcg
ctgcagaaaccttctaaggcccctgttcttcgtgtggatgcacttggtagggaaatagat
gaacatggaaatgtggtgaacgtgactaaaccaaacaacctcagcaccctaaaggtcaac
atcaacaagcagaaaaaggaagcattccagattcttaaacctgaattggatgtggatcct
gaatcaaatccttattttgatgcaaaaatgggaattaataagaataaattcttgagaccc
aaacggatgaccttccagtttgtagaggaaggcaagtggttaaaagaagctgaaataatg
aaactgaggaatcaatttggagaagaaagagaaaaggatatgaaggcaaggcaagcatta
catgcaaaggcaaaggcagctcctgatataaatcctaatttgatagaggtatcagagcga
gttacaaccaaagcaaagcctaaggatccaattcctgatattgagtggtgggatgtacct
ctgttgactagtgggacttatggtgatgatgttgatgatctcatgacccagcgtagattg
aaactggagaaaattactatctatgtggagcacccacgtccaattgagcccccggctgag
ccagctcctcccccacctcaacctttgaagctaactaagaaggagcagaagaagctccgt
acacagcgtcgcctcgctcgggaaaaagatagacaggagatgattagacaaggcttgatt
gaacctccaaaaccaaaggttaagatgagcaatctaatgaaagttcttggctctgaagca
acgcaagatccaactagacttgaaaaggaaattcgtactgcagctgctgaacgtgaacaa
gcacatattgatcgtaatactgcacgtaagctcactcctgctgagcgccgtgaaaagaag
gagagaaagctctttgatgacccaaatactgtggaaactattgtttctatttacagaatc
aacgatctttcagacaagaaaactcgcttcaaagttgatgtcaatgctcatgagaatcgc
ttgactggatgcacggtgattacagagggaatttgtgtggtggttgttgaaggggggagc
aaatccatcaaaagatacggaaaactaatgcttaggcgtataaactgggctgaagctgta
aatgaggatgaaggaggtgacaatgacgagaaaccaatgaacaaatgtgtgctagtgtgg
caaggtagtgttgccaaacctaacttccacaggttttctttgcatgagtgtgtgactgaa
gctgcagcccgaaaatattttgctgatgctggtgttgcccactattgggatctggctgtc
aatttctccgatgatcaaatgtga
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