KEGG   Populus alba (white poplar): 118060021
Entry
118060021         CDS       T07314                                 
Name
(RefSeq) ras-related protein RABF1 isoform X1
  KO
K07887  Ras-related protein Rab-5A
Organism
palz  Populus alba (white poplar)
Pathway
palz04144  Endocytosis
palz04145  Phagosome
palz04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:palz00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    118060021
   04145 Phagosome
    118060021
   04148 Efferocytosis
    118060021
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:palz04131]
    118060021
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:palz04147]
    118060021
   04031 GTP-binding proteins [BR:palz04031]
    118060021
Membrane trafficking [BR:palz04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab GTPases
    118060021
 Endosome - Lysosome transport
    118060021
Exosome [BR:palz04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   118060021
  Exosomal proteins of other body fluids (saliva and urine)
   118060021
  Exosomal proteins of colorectal cancer cells
   118060021
  Exosomal proteins of bladder cancer cells
   118060021
GTP-binding proteins [BR:palz04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab5/17/22/31 [OT]
    118060021
SSDB
Motif
Pfam: Ras Roc Arf Gtr1_RagA MMR_HSR1 RsgA_GTPase AAA_7 TniB
Other DBs
NCBI-GeneID: 118060021
NCBI-ProteinID: XP_034928995
LinkDB
Position
10:complement(20374769..20378217)
AA seq 168 aa
MGCSSSLPDRSTGRLGGLNNSDSSGVADAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP
TSKVTIGASFLSQTIALQDSTTIKFDIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPE
TFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQASIVIYWE
NT seq 507 nt   +upstreamnt  +downstreamnt
atgggttgctcttcttctcttccagataggagtactggcaggttgggtggacttaacaat
tcagatagcagtggagtggctgatgccaaaaacctacgcgtaaagctggttttattaggt
gattctggtgttggtaaaagctgtattgttcttcgctttgttcgtggccagtttgatcca
acatccaaggtaactattggagcttcatttttgtcacaaacaatagctttacaggattct
acaacaattaagtttgatatatgggatactgctggacaagaaaggtatgccgcactagca
ccgctatattacagaggtgctgcagttgcagttattgtgtatgatataacaagcccagag
acattcaacaaagcacagtattgggttaaggagctacaaaaacatgggagccctgatata
gtcatggctttagtaggtaacaaggctgatcttcatgagaagcgagaagtacctgctcaa
gcaagtatagttatttattgggaatag

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