Populus alba (white poplar): 118060141
Help
Entry
118060141 CDS
T07314
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118060141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118060141
03012 Translation factors [BR:
palz03012
]
118060141
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118060141
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
118060141
Translation factors [BR:
palz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
118060141
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
ATPase
T2SSE
AAA_19
AAA_16
Myosin_head
ABC_tran
PhoH
ATPase_2
Motif
Other DBs
NCBI-GeneID:
118060141
NCBI-ProteinID:
XP_034929188
LinkDB
All DBs
Position
10:21444870..21454242
Genome browser
AA seq
1154 aa
AA seq
DB search
MQNSKLILRSFLLGSCCTSTKKKSVSNTIFSNKNNNPLFGLPLLFLNSNETSFVAKRRGF
CGYAVEQFSDDEYECDFESHKASSSVANVDEWKWKLSLLLRSETDQEIVSKDRKDRRDYE
QISNLARRMGLYSELYGKVVVASKVPLPNYRSDLDDKRPQREVVIPLSLQRRVEGLLQEH
LDRAQLKAENVDGSADDAKSIDQTEDISLDENKDSFLDRSVMERVLQRRSLRMRNMQRAW
QESPEGRKMMDFRKSLPAFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIKS
GRGAFCSIICTQPRRISAMSVADRVSAERGEPLGEAVGYKVRLEGVKGKNTHLLFCTSGI
LLRRLLSDHNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRQDLRLILMSATLNAELF
SNYFGGAPTIHIPGFTYPVRVQFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQRQLVPRK
RKNQITTLVEDALNKSSFENYSSRARDSLACWMPDCIGFNLIEAVLCHICRKERPGAVLV
FMTGWEDISSLRDQLKAHPLLGDPNRVLLVTCHGSMATSEQKLIFEKPPPNVRKIVLATN
MAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRKGRAGRVQPGECY
HLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPESLAVQNAIG
FLKMIGALDEKENLTNLGKYLTMLPVDPKLGKMLIMGAIFHCFDPVLTIVSGLSVRDPFL
LPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKEAEREGSAYEYCWRNFLSAQTLQAI
HSLRKQFNFILKDTGLVEEDASSSNKLSHNQSLVRAIICSGLYPGIASVVHRETSMTFKT
MDDGQVFLYANSVNARYETIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGALACGV
QAGHLKMLDGYIDFFMDHNLAECFLKLKEELDKLLQKKLQDPNLDILKEGKYLMLAVQEL
VSGDQCEGRFVFGRESKKPKIINDNDRFTKDGANPKSLLQTLLMRSGHSPPKYKTKHLKT
NEFRALVEFKGMQFVGKPKRNKQLAEGDAAIEALAWLTHTSNNNQNEHDDSQPDVTDNML
KLLGKRRRSKRHSG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaattcaaagctaatactaagaagtttccttctgggatcttgctgcacctccacc
aagaagaagtcagtttccaataccatcttcagcaataaaaacaacaaccctttatttggt
ttgcctttgcttttcctaaattctaatgaaaccagctttgtcgccaaaaggcgtggtttt
tgcgggtatgcagtagagcagttctctgacgatgagtatgagtgtgattttgaaagccac
aaggcttcttcgtcggtggccaatgttgatgaatggaaatggaaactcagtttgctattg
cgtagtgaaacagaccaagagattgtttctaaggatagaaaagacaggagggactatgag
cagatatcaaatcttgctagaagaatgggactttatagtgaactgtatggaaaagtggtg
gttgcaagcaaggttcctcttcctaactacaggtctgatttggatgataagcggccacaa
agggaggtggttatcccactaagtttgcaaaggagggttgagggtttacttcaggagcat
cttgatagagctcaattaaaggctgaaaatgttgatggtagtgcagatgatgccaagtcc
atcgatcagactgaagatataagtttagatgagaataaggattctttcctagaccgttct
gtgatggaaagggttcttcagaggaggagtttgcggatgcgtaacatgcaaagagcttgg
caggaatcacctgagggcagaaaaatgatggacttcaggaaatctctaccggctttcaag
gaaaaggagaggttactccaagcaatagcgaggaatcaggtcatagtaatatctggagag
actggatgtggtaaaaccactcaactccctcaatatattctggagtcagaaataaaatct
gggcgtggagcattctgtagcataatttgcactcagcctcgaagaatatctgctatgtct
gttgcagatagagtgtctgcagagagaggagagcctctaggtgaagcagttggttataaa
gttcgactagagggtgtgaaaggaaaaaacacccatctgcttttttgtaccagtggaatt
ttactccgacgcctgttaagtgaccacaacttgaatggcataacccatgtttttgttgat
gaaattcatgagcgaggcatgaatgaagacttcctattgattgtgctcaaggatcttctt
ccacgtcgtcaagacttgagattgattttaatgagtgctactttgaatgcggaactcttt
tccaattattttggaggagcacctactattcatattccgggctttacatatccagtgagg
gtacaatttttagaagatgtactagaaatgactggatataagttgacttctttcaaccaa
attgatgattatggccaagagaaaatgtggaaaacacagaggcagctggtaccgcggaaa
aggaaaaaccagatcaccactcttgttgaggatgctcttaataaatcaagttttgagaat
tatagttccagagcacgtgactctctggcatgctggatgcctgattgcataggatttaac
cttattgaagcagttttgtgccatatatgtcggaaggaaagaccaggtgctgtcttagtg
ttcatgactggttgggaggatattagctctttgagggatcaactcaaagctcatcctctt
cttggtgatcctaacagagttctgcttgtaacttgccatggttcaatggcaacctctgaa
caaaaactgatatttgagaaacctcctcctaatgtacgtaaaatagttcttgcaacaaac
atggcagaggcaagtattacaatcaatgatatagtttttgttgtggattgtgggaaagca
aaagagaccacttatgatgctttaaacaatacaccctgcctgctaccttcttggatttca
aaagcatctgcacgacaaagaaagggtagggctggccgagtgcagccaggcgaatgttac
cacctatacccaagatgtgtatatgaagctttcgctgaatatcaacttcctgaacttttg
aggactcccctgaactctctttgcttgcaaataaagagtttgcaggttggaagcataggg
gaattcttgtcagctgctctccagccaccagaatcgttggctgttcaaaatgccattggt
tttctgaagatgattggagcattggatgagaaggagaatctgacaaatcttgggaagtat
ttgacaatgcttccagtagatcccaagctgggtaaaatgttaataatgggtgctatcttt
cattgctttgatcctgtgttgacaatagtgtccgggctcagtgtcagggatcctttcctt
ctgccacaggacaaaaaggatttagctgggacagcaaaatctagattttctgcaaaagac
tacagtgatcatatggctcttgtccgtgcatatgaaggatggaaagaagctgaacgagaa
gggtcggcatatgagtattgctggagaaatttcctatctgcacaaactttgcaggccatc
cattctctgaggaagcagtttaacttcattttaaaagataccggcttagtagaagaagat
gcaagcagcagcaacaaattaagtcacaaccaatcattggttcgtgcaattatatgctct
ggcctctatcctggaattgcatcagtggtgcatagagaaacatccatgactttcaaaaca
atggatgatggccaggtttttctatatgctaattctgtgaatgcacgttatgaaacaatt
ccttatccatggctggtctttggtgaaaaagtaaaggtcaacacagttttcatacgtgat
tccactggtgtatctgattcaatactgatcctttttggtggtgcccttgcttgtggggta
caggctggacatctgaaaatgttggatggatatattgatttcttcatggatcataatttg
gcagagtgcttcttgaagcttaaagaagaacttgataagctccttcagaagaagcttcaa
gatcctaaccttgacatactcaaggaaggaaaatacctcatgcttgctgttcaagagctg
gtatcaggagatcaatgtgaaggaagatttgtatttggtcgcgaaagcaagaagcctaag
ataattaatgataatgacagatttacaaaagatggagcaaatccaaaaagtttgctacaa
acactactgatgagatctggacactcccccccaaaatacaagacaaagcaccttaagaca
aatgagtttagggcactggtcgaattcaagggaatgcagtttgttgggaaacccaagaga
aacaagcaactagcagagggcgatgctgctattgaggcactggcctggttaactcacact
tccaacaacaatcaaaacgagcatgacgattcccaacctgatgtcactgacaacatgctg
aaacttctcggaaaacgtcgaagatcaaagcgtcactccggttga
DBGET
integrated database retrieval system
