Populus alba (white poplar): 118061718
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Entry
118061718 CDS
T07314
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118061718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118061718
03012 Translation factors [BR:
palz03012
]
118061718
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118061718
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
118061718
Translation factors [BR:
palz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
118061718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
R3H
DEAD
Helicase_C
HA2_C
Ank_2
Ank_5
HA2_N
ATPase
nSTAND3
AAA_19
AAA_22
Ank
Rad17
AAA_7
ABC_tran
PhoH
AAA_16
Motif
Other DBs
NCBI-GeneID:
118061718
NCBI-ProteinID:
XP_034931151
LinkDB
All DBs
Position
5:complement(19544090..19552489)
Genome browser
AA seq
1216 aa
AA seq
DB search
MNNQETKAQKGKMGKKNQKKAAQQQNPRVAEATLIRISKILESFRAAPDQVYTFEANLSN
YDRAVVHEVCKKMGMKSKSSGRGGQRRVSVYKNTKKLDDVKGKENLAHLTFSGESKIVLG
ELFSNYPPEEGGRGAELEGKHSGTAGKTREKKDDIFSKPSRKKAEIAKKVESFASRIEKD
AKLKQIVEGRSKLPIASFMDVITSTIESHQVVLISGETGCGKTTQVPQYLLDHMWGKGEA
CKIVCTQPRRISAISVAERISYERGENVGDSVGYKIRLESKGGKHSSIVFCTNGVLLRIL
VSKGITGSQDEANTVAKENVSDLTHIIVDEIHERDRFSDFMLAIIRDILPSHSHLRLILM
SATLDAERFSQYFGGCPIIRVPGFTYPVKAFHLEDVLSILNSRDDNHLDSAMPNVLDEGH
ELTEEDKAALDEAINLAWSNDEFDSLLDLVSSEGTPKVYDYQHSASGLTPLMVFAGKGRV
GDVCMLLSLGANCNLQSKCGLTALKWAEQENQEEAAEVIRKHAQNALAGSLEQQQLLDKY
MATINPELVDVVLIEQLLKKICVGSKDGAILVFLPGWDDINRTRERLLANPFFKDCSKFI
IISLHSMVPSVEQKKVFKRPPQGCRKIILSTNISESAITIDDVVYVIDSGRMKEKSYDPY
NNVSTLQSSWVSKASAKQREGRAGRCQPGICYHLYSKLRESSLPDFQVPEIKRMPIEELC
LQVKLLDPYCKIEDFLQKTLDPPVPETIRNAVAVLLDIGALSVDEKLTELGEKIGCLPVH
PLTSKMIFFAILMNCLDPALTLACASDYRDPFTLPMLPNEKKRAAAAKFELASLYGGHSD
QLAVLAAFECWNNAKNRGQEASFCSQYFISSSTMNMLQAMRKQLQRELIRKGFIPENVSS
CNTNAHVPGIVHAVLVAGLYPMVGRFLPPKNGKRVVETTSGAKVRLHPQSLNFKLSFWKS
NDYPLVIYDEITRGDGGMHIRNCTVIGPLPLLLLATEIVVAPAENDDEDDEDDDDDYDSA
DGAESDEDGMEIHGKLGTQQGERIMSSPDNSVMVVVDRWLYFGATALDVAQIYCLREQLS
AAILFKVTHPHKELPPALGAYTYATACILSNDGLSGISLPGESVESLTSMVHATEIDESC
SGRRGISQNPNSFLSSLKNNTQQTAPRYHNARSPNQRPPLQGSSSAGHSMQGPSGPRGDS
FKRQRGNATRQHVRYL
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatcaagaaaccaaagcacagaaagggaaaatgggtaagaagaaccagaagaaa
gcagcgcagcagcaaaaccctagagttgcagaagctactcttattcgaatctcgaaaatt
cttgaaagtttccgtgctgccccagatcaagtttacacattcgaagctaacctatcaaac
tatgaccgtgctgtggtacatgaggtgtgcaagaaaatgggtatgaagtccaagagttct
gggcgcgggggccagcgacgtgtttctgtttacaagaatacaaagaagttagatgatgta
aaggggaaggaaaacctcgctcatttgacattttcaggggaatcaaaaattgttttgggg
gaactattttcaaactaccctcctgaagaaggaggccgtggagcagagctagaaggaaaa
catagtggaactgctggtaaaacacgagagaaaaaagatgatatcttctctaaaccttcc
agaaaaaaagcagaaattgcaaagaaggttgaatcatttgcttctagaatagaaaaggat
gcaaagttaaaacagattgttgaagggaggtctaagcttccgattgcatcctttatggat
gtcattacatccactatagaatctcaccaggttgttctcatttctggtgagactgggtgt
ggaaagaccacacaggtgccacaatatcttttggaccacatgtggggaaagggtgaagca
tgtaaaatagtttgtacacaacctcgacgtatctctgcaatatcagttgctgagagaatt
tcttatgaaagaggagaaaatgttggagatagcgttggatacaagattcgtttggaaagt
aaaggtgggaagcactcgtcaattgtgttctgtacaaatggggttctattgaggattctg
gtttccaagggcatcactgggtcgcaggatgaagctaatacagtggccaaggaaaatgtt
tccgacttaactcatattattgtggatgaaattcatgaaagggatcgcttctctgatttc
atgttggcaattattagggacatacttccttcacattctcatcttcggctgatattgatg
agtgccactcttgatgctgaacgattttcacaatattttggtggctgcccaattatccgt
gttcctgggttcacttatcctgtcaaagctttccatttggaggatgtgctttctatctta
aattccagagatgataatcatcttgattctgctatgccaaatgtcctggatgaaggtcat
gaattaacagaggaagataaagctgctttagatgaagctattaacttggcttggtcaaat
gatgaatttgattccctcctagatttggtttcttctgaaggaaccccaaaggtgtatgat
tatcagcattctgcgagtggactgacaccactgatggtctttgctggaaagggtagggtc
ggtgatgtttgcatgctcctctctttgggcgcaaactgcaatttacagtccaagtgtgga
ttaacagcactgaaatgggctgaacaagaaaaccaggaagaagctgctgaagtaataaga
aaacatgctcagaatgccttggctggttctttggaacaacagcagcttcttgataaatat
atggcaacaattaatcctgaacttgttgatgtggttcttatagagcagttattaaagaaa
atatgtgttggttcaaaagatggtgctatccttgtttttcttccagggtgggatgatata
aatagaacgcgggagagattacttgcgaacccgttttttaaagattgttccaagtttatt
ataatctctctccattctatggttccatctgtggagcaaaagaaggtattcaaacgccca
cctcagggttgccggaaaatcattctttcaactaatatttctgaaagtgccattactatt
gatgatgtggtatatgttatagatagtggacgcatgaaagaaaaaagttacgatccttat
aacaatgtatcaactcttcagtcatcctgggtatctaaagcaagtgcaaagcaacgagag
ggacgtgcagggcgctgtcagcctggaatatgctatcatctatattcaaaactcagagaa
tcttctttgccagatttccaagttcctgaaatcaagagaatgccaattgaggaactctgt
ttacaggtgaagttgcttgatccctattgcaagatagaagatttcttgcaaaagacattg
gaccctccggttcctgaaaccatacgcaatgctgttgctgttcttctagatattggggct
ttatcagtggatgaaaaattgacagaactaggagagaagattggttgcctacctgttcat
ccattgaccagcaagatgattttctttgccatattgatgaattgccttgacccagctttg
acactggcatgtgcatctgattatagagatccatttacccttcctatgctgcctaatgaa
aagaagagagctgctgctgctaagtttgagcttgcttcattgtatggtgggcacagtgat
cagctagcagttttagcagcttttgagtgctggaacaatgcgaagaataggggtcaggaa
gcatcgttttgttcacaatacttcatctcttcaagcaccatgaatatgctgcaagccatg
cgtaaacagctccagagagaactaatacgcaaggggtttattccagaaaatgtctctagt
tgtaatacaaatgcgcatgttccaggtatagtccatgctgtccttgtggctggtttgtat
ccaatggtggggaggttccttccacctaaaaatggaaagcgtgttgtggagactactagc
ggtgctaaagttcggttgcaccctcagtcccttaattttaaattatcattttggaaatct
aatgactacccattggttatatatgatgagataactcgtggagatgggggtatgcacatt
aggaactgtactgtcattggtccactgccattattgctactcgcaacagagattgtagtc
gctcctgcagagaatgatgacgaggatgatgaggacgacgatgacgactatgatagtgca
gatggagctgaaagtgatgaagatggaatggaaatacatggcaaattaggcactcaacag
ggtgagaggatcatgtcctctcctgataattcagttatggttgttgtggatcggtggctt
tattttggagcaacagctcttgatgttgctcaaatttactgcttgagagagcaattatct
gcagcaatcttattcaaagtgacacatcctcacaaagaacttcctcctgctcttggggcc
tatacatatgccacggcttgtattctgtccaatgatgggctatctgggatttcattaccg
ggagaatccgtggagtcactgacttcaatggtccatgcaactgagattgacgagtcctgt
tcaggaaggagagggatcagtcagaatccaaatagcttccttagctcgctgaagaacaac
acacagcagaccgctcctcgttatcacaatgctaggagtcctaatcaaaggcctccattg
caaggctcctcatcagctgggcacagtatgcaagggccatcgggtccaaggggagattcc
tttaagcggcagcgtggaaatgcaaccagacagcacgtacgctatttgtag
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integrated database retrieval system
