Populus alba (white poplar): 118062033
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Entry
118062033 CDS
T07314
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
palz
Populus alba (white poplar)
Pathway
palz03008
Ribosome biogenesis in eukaryotes
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
118062033
09123 Folding, sorting and degradation
03018 RNA degradation
118062033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palz03021
]
118062033
03019 Messenger RNA biogenesis [BR:
palz03019
]
118062033
03009 Ribosome biogenesis [BR:
palz03009
]
118062033
03016 Transfer RNA biogenesis [BR:
palz03016
]
118062033
Transcription machinery [BR:
palz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118062033
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
118062033
Ribosome biogenesis [BR:
palz03009
]
Eukaryotic type
Pre-60S particles
RNases
118062033
Transfer RNA biogenesis [BR:
palz03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
118062033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
118062033
NCBI-ProteinID:
XP_034931597
LinkDB
All DBs
Position
5:21818596..21827584
Genome browser
AA seq
1098 aa
AA seq
DB search
MGVPAFYRWLAEKYPLVVVDVIEEEPVVIEGVKIPVDTSKPNPNNIEYDNLYLDMNGIIH
PCFHPEDRPSPTSFGEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDASDAAAEEERLREEFEREGRKLPPKETSQTFDSNVITPGTEFMAVLSIALQYYIHL
RLNYDPGWKKIKVVLSDANVPGEGEHKVMSYIRLQRNLPGYDPNTRHCLYGLDADLIMLA
LATHEVHFSILREIVFTPGQQDKCFICGQTGHLAAACEGKAKRKAGEFDEKGNDVAVPKK
PYQFLNIWTLREYLEYEFRIPNPPFEIDLERTVDDFIFICFFVGNDFLPHMPTLEIREGA
INLLMAVYKKEFRVLGGYLTDGSKPNLSRVEHFIQAVGAYEDKIFQKRARLHQRQAERVK
REKTQARRGDDAQPQHQPESLVAVTQFRGSRLASAPTPSPYQNDGTHSQTSDGKGSSVRS
RKVARLSSTANIGAAIVEAENCLEIEAHENKEELKTKLKESLREKSDVFNSKNHEEDKVK
LGEPGWKERYYEEKFSAKSLDEMEAVRRDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHY
APFASDLTDLGQLNISFELGSPFKPFNQLLGVFPAASSHALPVHYRKLMTDPNSPIFDFY
PTDFEVDMNGKRFAWQGIAKLPFIDETRLLAEVQKIEHTLTEEEARRNSMMFDMLFVSSS
HPLSESIYLLDNHCKQLTDKERVEVKERINPELRPTCSDGMNGYLSPCAGDTHPPIFRSP
VVGMEDILANEVICVIYRLPDPHKHITYPPVGVIFPKKIVDQGDLKPDPVLWHEESGRRP
WENDRRNPHGNIAGRHLGEASHRLVANSLHLKGDRNGYNNHMHGPPQPYIASPRGPPLSS
YSNGLHNQGPHGALRPRVDYSHAGYPRSTSPRIPPHHDRGYVEPYASTGPNPSYSGRLPQ
YESENRSGGQHPRHEFHQNGGPRYPNGPGAHISTGPPTYAYQGGYDASPQPPGVGSHQQW
GGRFPPPANHNNPRGFGHHQQSGNRFSSLDSRGNKMPPQHGGANRRQPPPSGTYRGAQQS
PPGGASRRPHPPGGYGHQ
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccggctttttatcggtggttagcggagaagtatccgctagtggtggttgat
gtgatcgaagaagaaccggtagttattgaaggcgttaaaattcctgtggatacaagtaaa
cctaaccctaacaacatcgaatatgataatttatatctcgatatgaacgggattattcac
ccctgctttcatcccgaagacagaccttcaccgacttctttcggtgaggtgttccagtgt
atgtttgattatattgacaggcttttcgtgatggtgaggcctcgaaaattgctatacatg
gcaattgatggagttgcaccacgggcgaaaatgaatcagcaacggtctaggcgatttaga
gcagctaaagatgcatctgatgcggctgctgaagaagaaaggctaagagaggagtttgag
agggagggcaggaagcttccccctaaggagacatctcaaacttttgattccaatgttatc
actcctggaactgaattcatggctgttttgtcaattgcattgcagtactatattcatctt
agactaaactatgatcctggatggaagaaaatcaaggttgttctttctgatgcaaatgtt
cctggtgaaggggaacacaaagtcatgtcctatatccgtcttcaaagaaaccttcctggt
tatgatccaaatacacgccattgtttgtatggtttggatgctgatttaattatgttggct
ttggctactcatgaggttcatttttcaattcttcgagagattgttttcactcctggacaa
caagacaaatgcttcatatgtggtcagacaggtcatttagcagctgcttgtgaaggaaaa
gcgaagaggaaggcaggagaatttgatgagaaaggcaatgatgttgccgtgcccaaaaaa
ccataccagtttctcaacatttggactcttagagagtatttggagtatgaattcagaatt
cccaatcctccgtttgagattgatttggaacgtaccgtggatgattttatattcatatgt
ttctttgttggcaatgatttcctgccacacatgcccacattggagatccgcgagggtgca
atcaacttgctgatggctgtttataagaaggaatttagggtgcttggtgggtatttgact
gatggcagcaagccaaatttaagtagagtggagcattttattcaagctgtgggtgcatat
gaagataaaatattccagaaaagagcacgattgcaccagcgccaggcagaaagagttaag
cgtgaaaagacacaggcaagaagaggtgatgatgcgcagcctcaacatcaacctgaatct
ttggttgcagtcacacaatttcgtggttctcgtcttgcttcagctcctacaccttcacca
tatcagaatgatgggacacattctcagacatctgatggtaaaggatcttctgttcggagc
cgtaaagttgcacgtttgtcttcaacagccaatattggtgctgccattgttgaggcagag
aattgtctggaaatagaagcacatgaaaacaaagaagaattgaaaactaagcttaaggag
tcgcttcgcgagaaatctgatgtttttaactcaaagaatcacgaagaagacaaggtcaaa
ttgggagaaccagggtggaaagaaagatattatgaagagaagttttcagcaaaatctctt
gacgaaatggaagctgtacgaagagatgttgttttgagatatacggaagggctgtgttgg
gtcatgcattattattatgaaggcgtttgttcttggcagtggttttatccctatcactat
gcgccctttgcttcagatctcacagatcttggtcagctgaacatcagttttgaacttggt
tctccattcaaaccattcaaccagcttttgggagttttccctgcagcaagttcccatgct
ctccctgtgcattataggaaattgatgacggatccaaattcacctatttttgatttttac
cctactgattttgaagtggacatgaatgggaaacgatttgcatggcagggtattgcaaag
cttcccttcattgatgaaactcgtcttcttgcggaggtccaaaagattgagcacacatta
acggaggaagaagcaaggagaaacagtatgatgtttgacatgctttttgtgtcatcatct
caccctctctctgagagcatatatttgctcgataatcattgcaaacaattaacagacaag
gaacgagttgaagtcaaggagcgtatcaatcctgagttgaggcctacatgcagtgatggg
atgaatggctatttatctccctgtgctggagatactcatcctcctatattcaggtctcca
gttgtaggcatggaagacattttggccaatgaagtcatatgtgttatatacagacttcct
gatccacacaaacacatcacttatccacctgttggtgttatattccccaaaaagattgtg
gatcagggcgatctgaaacctgacccagttttatggcacgaggaatctgggaggaggcct
tgggaaaatgacaggcgaaatccccatggaaacatcgctggccgtcatcttggggaggca
tcgcatcgacttgttgccaacagtctacacctgaaaggggatcgcaatgggtataacaat
catatgcatggcccaccacaaccttacattgcatctccccgtggcccaccactctcttcc
tattcaaatgggttgcacaatcagggaccccatggagctttgcgtcctagagtggattat
tctcatgcaggttatccccgatctacaagtcctcgtataccacctcaccatgaccgtgga
tacgttgaaccctatgcttcgacaggacccaacccctcgtatagtggtaggcttcctcag
tatgaaagtgagaaccgatcaggtgggcaacatccaaggcatgaatttcatcagaatggt
ggaccaaggtacccaaatgggcctggggcacacatatcaaccgggccccctacatatgct
tatcaaggtggttatgatgccagtccccagccacctggagttggtagtcaccagcaatgg
ggtggtaggtttcccccaccagccaaccataacaatcccagaggttttggtcaccatcaa
caaagtggcaaccgattttcatcgttggattctagaggaaataaaatgccaccacaacat
ggcggagcaaataggagacaaccaccacctagtggaacatacaggggggcacagcaatca
cctcctggcggagccagtcggaggccccatccaccaggtggatatggtcaccaataa
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