Populus alba (white poplar): 118062826
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Entry
118062826 CDS
T07314
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03013
Nucleocytoplasmic transport
palz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118062826
03015 mRNA surveillance pathway
118062826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118062826
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118062826
5.6.2.5 RNA 5'-3' helicase
118062826
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118062826
mRNA cycle factors
Common to processing body (P body) and stress granule
118062826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
NPHP3_N
UvrD-helicase
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
AAA_25
Ribosomal_S13_N
AAA_32
Peptidase_S66
AAA
Motif
Other DBs
NCBI-GeneID:
118062826
NCBI-ProteinID:
XP_034932569
LinkDB
All DBs
Position
3:complement(12657787..12671265)
Genome browser
AA seq
1269 aa
AA seq
DB search
MDNQDNNLYETASQPDTATDAYTFLEFNTQGESDFDYPEFRSPVAWPTPSDSLGATSSAV
DPISSDHRTAASTPDLHSDSPAASPVASKSAARGGGANSGTQGVVEGLVASIGGLNFEET
GDDDGYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRA
KHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMN
WDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKP
GVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVA
YFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVD
MNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVENQTVRNALPRRFG
APGLPELNASQVLAVKNVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN
VAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKD
EQGELSSSDEKKYKALKRATEREISQSADVICCTCGGAGDPRLANFRFRQVLIDESTQAT
EPECLIPLVLGAKQVVFVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQY
RMHPCLSEFPSNNFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGT
SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIE
VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQ
PLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPNDSFGSV
ASASSNADRRNSRARGSYLSPGPPNGTHKPGVAGFPMPRVPIPPFHDGPTSQPYAIPTRG
AVHGPIGAVPQVPPPGSRGFSAGRGNAGAPIGSHLSHQQGNQQGIGNIGSFNFPALENPN
SQPSVGGPLSQPGYVNNIPVQGSSQTFRDGFSVGGMSQEFLGDDFKSQGSHVPYNVADFS
TQASQGGYAVDYVTQGAQGGFPGNFLNQNSQPGYSRFGSGNDFMSQDYMAHGSQGLFTQV
GFNDPSQEDASQSHFGIANPNQLQSQGLMNSLYSQPFGHYNTQQLNLQAPQQQPQQGQGT
QNQKIHYNG
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggataaccaagacaataacctctacgaaacggcctcgcagccagacacagcaacagat
gcctacaccttccttgaatttaacacacaaggcgaatccgattttgactaccccgaattc
cgctctccggtggcttggcccactccttctgattctctcggcgccacctcctccgccgta
gaccctatctcatccgaccaccgtaccgccgcttccacccccgatctccactctgattcc
cctgctgcgtctcctgtcgcgtcaaaatctgctgcgcgtggcggtggagcgaatagtggg
acccagggggtggtggaggggttagtggcgagcataggagggttgaattttgaagagacg
ggagatgatgacgggtatgagtttgggaaaggggattttacggagcacgcttgtaggtac
tgcggggtttcgaatcctgcgtgtgttgtgaggtgtaatgtgccttcatgtaggaaatgg
ttctgtaattcaagagggaatacatctggttcgcatattgttaatcatctggttcgagca
aagcataaagaagtctgtctccataaagatagccctcttggagaaacaatacttgagtgc
tacaactgtggttgccgaaatgtgtttcttcttggatttatatcggccaagacagagagt
gttgttgtgctcctctgcagggagccttgcttgaatgttaatgcgctgaaggacatgaac
tgggacctgagccagtggtgcccccttattgatgataggtgttttctacaatggcttgtg
aagatcccatctgaacaggagcagttgagggctcgccaaattagtgctcaacaaataaat
aaagtagaagaactttggaaaactaatcctgacgccacccttgaagatcttgagaagcct
ggtgttgatgatgagccacagcctgtggcattgaagtatgaagatgcatatcagtaccaa
aatgtgtttgctccacttattaagcttgaagctgactatgataaaatgatgaaagagtct
caaagcaaggataatgtcactattcgatgggatattggccttaacaagaagcgtgttgca
tattttgtatttccaaaggaggacaatgagttgcgtcttgtacctggcgatgagttacga
ctgcgctactctggagatgcagctcatccagcatggcaatcagttgggcatgtgatcaag
ctaactgcacaagaggaggttgcacttgagcttcgtgctagtcagggagttcctgttgac
atgaaccatggttttagtgttgattttgtttggaagagcacgagctttgatcggatgcag
ggagcaatgaagacttttgcagtggatgaaaccagtgtcagtgggtatatatatcaccac
ttgttgggccatgaggttgagaatcaaacagttcgtaatgcattgcctcgccgttttggg
gcacctggtcttccagagctgaatgcatcccaagttcttgctgtgaagaatgtcctccaa
aagcccattagtttgattcaaggtccacctggcacaggaaaaactgttacttctgcagcc
attgtatatcacatggccaaacagggccaagggcaggttttggtgtgtgccccaagtaat
gtggctgtagatcagctagctgagaagataagtgccactggcttaaaggtggttaggcta
tgtgcaaaatcaagggaagctgttagttctcctgttgagcatctcacccttcactatcag
gtcagacatctggacacttcagagaaaagtgaacttcacaagttgcaacaattgaaagat
gaacaaggggaactgtccagtagtgatgagaaaaaatacaaagcactgaaacgagcgact
gaaagggaaatatctcaaagcgctgatgtcatctgttgcacttgtggtggtgctggagat
cctcggttggcaaattttaggtttcgccaggtacttattgatgagtcaactcaagcgaca
gaaccagagtgtcttattcctttggtacttggggcgaagcaggttgtttttgttggtgac
cattgccagctcggtcctgtcattatgtgcaagaaagctgctcgtgctgggttagcccag
tctctctttgaacgccttgttttacttggtgtgaaaccaattagattgcaggttcaatat
cgtatgcacccgtgtctttctgaatttccatctaacaacttttatgaaggcactctacaa
aatggagtgactgtcaatgagagacaatcatcaggcattgattttccttggcctgtgcct
aatcgtcctatgttcttctatgtccaaatgggacaagaagagataagtgccagtgggaca
tcctatctaaatcgtacggaggctgcaaatgttgaaaaaattgtaactacgtttttgagg
agcggtgtagtcccgagccagattggagtgataacaccttatgaggggcagagagcatat
attgtgaactatatgtcaagaaatggtgccctcagacagcaactatacaaggaaattgag
gttgcaagtgttgattcatttcaaggaagagaaaaagattacattattttgtcttgtgtt
aggagcaatgaacatcagggcattggatttcttaatgatcctcggaggctgaatgttgct
ctaactcgtgctcgatatggtattgtcatcctgggaaaccctaaagttctaagcaagcag
cctttgtggaatagcttattaactcactacaaggaacacgagtgtttggttgaaggacct
ttgaataacttgaagcagagtatggttcaatttcaaaagcccaaaaagatttataacgac
aggagactgttttttggtggtggacctggaattgtcccaaatgatagttttgggtctgtt
gcctcagctagctcaaatgctgatagaagaaactcccgtgccaggggttcttatttgtca
ccaggcccaccaaatggtacccataagcctggtgttgctgggtttccaatgcctcgggtc
ccgattccaccatttcatgatggtccaacttctcaaccttatgctattcctactcgtgga
gctgtgcatgggcccatcggagctgttcctcaagtccctccacctggaagtcgaggtttt
agtgctgggcgtggcaatgctggtgcacctattggaagtcatctctctcaccagcaaggc
aaccagcaaggcattgggaatattggatcgttcaactttcctgccctagagaatccaaat
agccagccatctgtgggtggtccactatctcagcctggatatgttaataatattccagtt
caagggtcgagccaaaccttccgtgatggattttccgtggggggtatgtcccaggagttc
ttgggcgatgacttcaaaagccagggatcacatgttccttacaatgttgctgatttctca
actcaggcatctcaaggtggatatgctgtcgattatgttacacaaggggcacaaggtggg
tttccaggcaacttcttgaatcagaattctcaacctggatactctcgttttggttctgga
aatgatttcatgtctcaggattacatggctcatggatcacaaggtctattcactcaggtt
ggctttaatgatccctcgcaagaagatgcatcacaaagccactttggcatagccaaccct
aaccagcttcaatcacagggcttgatgaattctctctactctcagccctttggccactac
aacactcagcagctgaacttgcaggctccacaacagcagcctcagcagggtcagggtacc
caaaaccagaaaatccattacaatggttga
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integrated database retrieval system
