Populus alba (white poplar): 118063583
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Entry
118063583 CDS
T07314
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
KO
K14829
pre-rRNA-processing protein IPI3
Organism
palz
Populus alba (white poplar)
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
palz03009
]
118063583
Ribosome biogenesis [BR:
palz03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
118063583
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
EIF3I
NBCH_WD40
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_Vps41
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_IP5PC_F
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF4
Beta-prop_HPS5
PQQ
BCAS3_WD40
Beta-prop_SPT8
Beta-prop_NWD2_C
PEP5_VPS11_N
Beta-prop_NOL10_N
Motif
Other DBs
NCBI-GeneID:
118063583
NCBI-ProteinID:
XP_034933546
LinkDB
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Position
1:43493607..43495157
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AA seq
412 aa
AA seq
DB search
MSSSREIVLTSSPDGPITAYDIFSGTTLARFSGSRSPRHGLVLAGKAYIAASHISSATAS
GSIHLYNWWSSTAFHHLPVPEPVAPLAATPDGSFLFAGGVSGNVYALSIPSGNILKSFPA
HTKPVSCLTISNDGSLLISGGDDGTILVVPIFQLVDQTTDGNCSDFMLHSFVAHEGPVTA
ITCIGFCHHIVISCSTDCTSKLWSLLDGTNLRKITFPCAISRIALDPTGTEFYAAGADGS
IYKGFLKVGSRKQVSRMLELAILADKHGGAIISVVVMNAGKNLVSAAEDGRVYLWEVERG
QVIMVLGNNMESISDLVVASGIGDARRQGVRVGDNMNKSVGGGIVLSGKEFTRSVKDTVE
IEDVLSVAAKDRSKAIDMLESAIGVYERLLELILKEARGGTSKNSHEDNGDM
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttctcgtgagattgtccttactagctctcctgacggccccattactgcttat
gacatcttctcaggcaccaccctagctcgcttctctggcagcaggtcaccacgccatggc
ctagtccttgcagggaaggcttatattgctgcctctcatatctcctcagccactgcctcc
ggctcaattcacctgtacaattggtggtcctcgacagcttttcaccatctgcctgtccct
gaacctgtggctccacttgctgccactcctgatgggtcatttttatttgctggtggcgtt
tctggcaatgtctatgctctctccatcccttcaggtaacattctgaaatcatttcctgcc
cacaccaaacctgtatcctgccttacaatcagcaatgacgggtcactcctaatttctggt
ggtgatgacggtaccatacttgttgttccaatctttcaacttgttgatcaaacaacggat
gggaattgtagcgattttatgttgcatagctttgttgcacatgagggtccagttacggct
attacttgtattgggttctgccaccatattgtaatttcatgttcaacagattgcacaagc
aagttgtggagcctcttggatggaacaaacctgcgcaaaattacatttccatgtgcaatt
tcaaggattgctttggacccaacagggacagaattctacgctgcaggggcggacggttcg
atttataagggatttttgaaagtcggaagcagaaaacaagtgagccgcatgcttgaattg
gcgatcttggctgacaaacatggtggagcaatcatatctgtggtggtgatgaatgcgggg
aagaatctggtatctgctgcagaggatgggagggtgtatttgtgggaagttgaaagaggg
caggtgattatggttcttggcaataacatggaaagcataagcgatctggttgtcgccagt
gggattggtgatgctagaagacagggtgttagagttggcgataacatgaataaatctgtt
ggtggaggtattgtgctatctggaaaagagtttaccagatcagtgaaggatacagtagag
attgaggatgtcttatctgtggcagcaaaagataggagcaaagccattgatatgctggag
tctgcgattggagtgtacgagagactattggaactcattctcaaggaagccaggggaggc
actagcaagaatagccatgaggacaacggtgacatgtaa
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