Pantoea ananatis LMG 20103: PANA_0463
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Entry
PANA_0463 CDS
T01195
Symbol
deaD
Name
(GenBank) DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pam
Pantoea ananatis LMG 20103
Pathway
pam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PANA_0463 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pam03019
]
PANA_0463 (deaD)
03009 Ribosome biogenesis [BR:
pam03009
]
PANA_0463 (deaD)
Enzymes [BR:
pam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PANA_0463 (deaD)
Messenger RNA biogenesis [BR:
pam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PANA_0463 (deaD)
Ribosome biogenesis [BR:
pam03009
]
Prokaryotic type
rRNA helicases
PANA_0463 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADD75630
UniProt:
D4GIA0
LinkDB
All DBs
Position
535355..537256
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AA seq
633 aa
AA seq
DB search
MYYMTDIQTTFAELGLNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKT
AAFSLPLLHNIDPTVKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDV
QLRALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQI
PEGHQTALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAYGRKTDALVR
FLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDI
LIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLR
NIERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLEQYRALLAKMQPEEELDI
ETLAAALLKMAQGERPLIVPADAPRPARREFRERDDRRESRDARGPRESRDGDRPRRERR
DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGDV
LQHFTRTRILNKPMNMQLLGDAQPHEGGRGERRPGAGAGERRGGGARPEGQGPRRFSSER
REGGREGGRSFNREGGRGPRREDGAAAPRRRDA
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
gtgtactacatgactgatattcaaaccacttttgcagaacttggcctgaacgccgaactc
cttgaatcactgaacggcatgggctatgtcaagccatccccaatccaggctgagtgtatt
cctcacctgctggcgggccgtgacgtattaggtatggcgcagaccgggagtggtaaaact
gcagcgttctcgctgccgctgttacacaacatcgatccaactgttaaagcaccgcaaatt
ttggtgctggcaccgacccgcgaactggcggtgcaggtagctgaagctgttaccgaattc
tctaaacatatgcgcggtctgaacgtggttgccctttacggcggccagcgttatgacgtg
cagctgcgcgccctgcgccagggaccacaggttgtcgtaggtactccaggccgtctgctg
gatcacctgaaacgtggcacgttagatctgtctaacctgcgtggtctggtgctggacgaa
gccgatgaaatgttacgcatgggcttcatcgaagacgttgaaactatcatggcgcagatc
ccagaaggtcatcagaccgcactgttctctgccaccatgccagaagcgattcgtcgtatt
accaagcgttttatgaaagatccgcaggaagtgcgcattcagtcaagcatgactacgcgc
ccagacatcagccagagttactggacggcttacggccgtaaaactgacgcgctggttcgc
ttccttgaagcagaagacttcgatgctgcgatcattttcgtgcgcactaaaaacgcaacg
ctggaagtggctgaagcgctggagcgcagcggttacaacagtgcggcactgaacggcgat
atgaaccaggcactgcgtgagcagacgctggagcgcctgaaagatggtcgtctggatatc
ctgattgctaccgacgttgcggcccgtggcctggacgttgagcgtatcagcctggttgtt
aactacgatattccgatggacgcagaatcttacgttcaccgtatcggccgtaccggtcgt
gctggtcgtgcaggtcgcgcactgctgttcgtagagaaccgcgagcgtcgtctgctgcgt
aacatcgaacgcaccatgaagctgaccattccagaagttgagctgccaaatgcagaactg
ctgggtcagcgtcgtctggctaagttcgcggcaaaagttcagcagcagctggaaagcagc
gatctggaacagtaccgtgcgctgctggcgaagatgcagcctgaagaagagctggatatc
gaaacgctggctgctgcgctgctgaaaatggcacagggtgagcgtccgctgatcgttcct
gctgatgcaccacgtccagcgcgtcgtgaattccgtgagcgtgacgatcgtcgtgagagc
cgtgatgcacgtggtccacgcgaaagccgtgatggcgaccgtccacgtcgcgaacgtcgt
gacgttggcgatatgcaactgtaccgcattgaagtgggccgtgacgacggtgttgaagtg
cgtcatatcgtgggcgcaattgccaacgaaggcgatatcagcagccgttacatcggtaac
atcaaactgtttggtacgcactccaccatcgagctgccgaaaggcatgccaggtgacgtg
ctgcagcactttacccgtacgcgtattctgaacaagccaatgaatatgcagctgctgggt
gatgctcagccgcacgaaggtggccgtggcgagcgtcgtcctggcgccggtgctggcgaa
cgtcgtggcggcggtgcacgtcctgaaggtcagggcccgcgtcgtttctcttctgagcgc
cgtgaaggtggtcgtgaaggcggacgcagcttcaaccgcgaaggcggtcgtggtccacgt
cgtgaagacggtgcggctgcaccacgtcgtcgtgacgcgtaa
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