Pantoea ananatis LMG 20103: PANA_1475
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Entry
PANA_1475 CDS
T01195
Symbol
rne
Name
(GenBank) Rne
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pam
Pantoea ananatis LMG 20103
Pathway
pam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PANA_1475 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pam03019
]
PANA_1475 (rne)
03009 Ribosome biogenesis [BR:
pam03009
]
PANA_1475 (rne)
Enzymes [BR:
pam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PANA_1475 (rne)
Messenger RNA biogenesis [BR:
pam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PANA_1475 (rne)
Ribosome biogenesis [BR:
pam03009
]
Prokaryotic type
rRNA processing factors
PANA_1475 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
TMEM151
Motif
Other DBs
NCBI-ProteinID:
ADD76642
UniProt:
D4GC39
LinkDB
All DBs
Position
complement(1661500..1664793)
Genome browser
AA seq
1097 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALELPDGMGLIVRTAGVGKSAESL
QWDLSFRLKHWEAIKKAADSRAAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKDNTKEVHAIVPVPVASYLLNEKREAVNAIEKRQGGVRAVIVPDDRME
TPHYSVLRVRKGEETQTLSYHLPKLHEAEMAMPSEEEHAERRRPEQPALAAFVMPDAPPA
PAEASPEVATPSATVTQPAPAAAPASEGFVSRLLSGLKKLFAGEPAPAAVEPVAEVTAPQ
KTSEDENGNPRGDRRNNRRNNNRRERTPRNGDNAQQRESRDNRDARDNRDNRGESRDNRE
PREDNRRNKRQAQPNDARDDRPVLSDEARQQRDEQQQQRREQRAERQRRRQEEKRAQQDA
NSAVEQTAEAVAPAAVDAQEDERVQVMPRRKPRQLTQKVRVGDNNDQPQTAAVESAESAD
VQKVQPVVETSQVEETEENEGRDNANMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSAMP
LDAAAASPEMASGKVWIRYPVAQANEEQIVQDAPQSTPDYSREETAPAVALPVATEEAPA
SQAAPVQIAEPQADAPVTVVNTDDTQAIEAPVHHEPSVIPAAAEAGAEAIAQQAQPADAV
EAPEVSVPEVKVPVVAESAPEETADEHAGTEVSAATEAQVAEVLHAPVAAEEAITPVSEP
HAPVAARDIPVEALKANAETRWKHFASAPMTKAPAPVWQPEPARQSDWQRPAFKFEGRGS
AGGHSATHQATAPATKP
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaggagttgcgcgttgccctggttgat
ggtcaacgtctgtacgatctggatatcgaaagcccaggacacgaacagaaaaaagccaat
atctacaaaggtaaaatcacccgtatcgaacccagccttgaagcggccttcgtcgattac
ggtgcagaacgtcacggtttcctccctctgaaagaaatttcccgcgaatacttccctgct
aattacaactcacacggtcgtccgaacattaaagacgtgctgcgtgaaggtcaggaagtc
attgttcagattgataaagaagaacgcggcaacaaaggcgctgcgctcactacctttatc
tctctggccggtagctatctggtattaatgccaaataacccgcgcgcgggtgggatttct
cgtcggattgaaggtgatgaccgtaccgaactgaaagaggcgctatcggcgctggaactc
cctgatggcatggggctgattgttcgcacggcgggcgtcggtaaatcagccgaatcgctg
cagtgggaccttagcttccgtctgaagcattgggaagccatcaaaaaagcggctgacagc
cgcgcggccccgttcctgatccatcaggaaagcaacgtgatcgtgcgcgccttccgcgac
tatctgcgtcaggatatcggtgagattcttatcgataacccgaaagtgcttgagctggca
cgtcagcatatcgccgcgctgggccgtccggactttagcagcaaaattaagctctacacc
ggtgagattccgctgttcagccattaccaaatcgaatcgcaaatcgaatccgctttccag
cgtgaagttcgcttgccgtcaggcggctcaatcgttatcgacagtaccgaagcgcttacc
gccatcgatatcaactccgcccgtgccacgcgcggtggcgatattgaagaaaccgccttt
aataccaacctggaagcggcagacgaaattgctcgccagctgcgtctgcgcgacctgggc
ggcctgatcgttatcgacttcatcgatatgacaccggttcgtcaccagcgcgcggttgaa
aaccgtctgcgtgaagccgtccgtcaggatcgcgcccgtattcaaatcagccatatttca
cgttttggcctgctggagatgtcccgccagcgcctcagcccgtccctgggcgagtccagc
caccacgtctgtccacgttgtagcggcaccggcactattcgtgataacgaatctctgtcg
ctgtccattctgcgcctgattgaagaagaagcgctgaaagacaacaccaaagaagtgcat
gctatcgtgccggtcccggttgcctcttacctgctgaatgaaaaacgtgaagcggtaaat
gctatcgagaaacgtcagggcggcgtacgtgcggtcatcgtgccggacgaccggatggaa
accccgcactactccgttctgcgcgtgcgcaaaggcgaagaaacgcaaacgctgagctac
cacctgccgaaactgcatgaagccgagatggcgatgccatctgaagaggagcatgctgag
cgccgccgtccagagcagcctgctctcgcagcctttgtgatgcccgatgcgccgccagca
ccggccgaagcctcaccggaagtggccacaccttcagcgactgtgacgcaacccgcacca
gcggccgcgccggccagtgaaggttttgtcagccgtctgctgagtggattgaaaaaactg
tttgctggcgaacctgctccggcggctgtcgagccggttgccgaggtgacggccccgcag
aaaaccagcgaggacgagaacggcaacccgcgtggcgatcgtcgtaataatcgtcgcaac
aataaccgtcgcgaacgtaccccgcgcaacggtgataacgcacaacagcgcgaatctcgc
gataaccgtgacgctcgtgataaccgtgataaccgtggtgagtctcgagataatcgcgag
ccgcgtgaagacaatcgtcgtaacaagcgtcaggcccagcctaatgacgcgcgtgacgat
cgtccggtactgagcgatgaagcgcgccagcagcgtgatgagcagcagcaacagcgccgc
gaacaacgtgctgaacgtcagcgtcgtcgtcaggaagagaaacgtgctcagcaggacgct
aacagcgcggtggaacaaaccgccgaagcggtcgcgcctgctgctgtggatgcgcaggaa
gacgagcgcgttcaggtgatgccacgccgcaaaccgcgccagctgacgcagaaagtccgc
gttggtgataataatgaccagccgcagaccgccgccgttgaatcagccgaatcggctgac
gttcaaaaggtgcagcctgttgtcgaaacgtcgcaggttgaagagacggaggagaacgaa
ggtcgtgataatgccaatatgccacgtcgttcacgccgttcacctcgccatctgcgcgta
agtggtcagcgtcgccgtcgttaccgtgatgaacgttatccgactcagtccgcgatgcct
ttagacgccgctgcggcttcgcctgagatggcgtccggcaaagtctggattcgctacccg
gtcgcgcaagcgaatgaagagcaaatcgttcaggatgcgcctcaatcgacaccggactac
agccgtgaagagactgcacctgctgttgccctgcctgtcgccaccgaggaagcgccggct
tcacaggctgcgccagtacaaatcgcagagccgcaggctgacgccccggttaccgtggtg
aatactgacgatactcaggccattgaagccccggttcatcatgaaccttcggtgattcca
gccgccgctgaagccggtgctgaagcgatcgcgcaacaggctcagcctgctgacgctgtc
gaagcgccggaagtgagcgtgccggaggtgaaggtgccggttgtcgcagaatccgcgcct
gaagaaacggcggatgagcatgcgggcactgaagtcagcgctgcgaccgaagcgcaggtg
gcagaggttttacacgcgcctgttgccgctgaggaagccattacgccggttagtgaacct
catgcacctgttgccgcacgcgacatccctgttgaggcattaaaagccaacgccgaaacg
cgctggaagcactttgcttctgcaccgatgaccaaggcgcctgcgccagtgtggcaaccc
gagcctgcccgtcaaagtgactggcaacgtccggcctttaaatttgagggcagaggttct
gctggcggccacagcgccacccatcaggctactgcacctgccaccaagccgtaa
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