Pantoea ananatis LMG 20103: PANA_3106
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Entry
PANA_3106 CDS
T01195
Symbol
recD
Name
(GenBank) RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pam
Pantoea ananatis LMG 20103
Pathway
pam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PANA_3106 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pam03400
]
PANA_3106 (recD)
Enzymes [BR:
pam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PANA_3106 (recD)
DNA repair and recombination proteins [BR:
pam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PANA_3106 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
Helicase_RecD
Viral_helicase1
SH3_13
AAA_11
UvrD-helicase
AAA_22
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
AAA_28
UvrD_C
T2SSE
PhoH
CbiA
AAA_7
MukB
TrwB_AAD_bind
AAA_5
AAA
FtsK_SpoIIIE
SRP54
ResIII
DO-GTPase1
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ADD78273
UniProt:
D4GLM0
LinkDB
All DBs
Position
complement(3484244..3486091)
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AA seq
615 aa
AA seq
DB search
MSDINALLLQAVEKRLLRPLDIQFARLIADDAQPFLLLAAACVSADAGEGHVCLPLANLS
EAGLFAGRQPALAQALWQAAGAPDDVHAALAGWSAISDGSAVTPLVLSHERLYLHRLWQS
EGQVARFFSLQPDEGTFDAHRASEVLTSLFGSRPDDWQKIAAAVALTRKTAVISGGPGTG
KTTTVAKLLAALIRLNTVPLRIQLAAPTGKAAARLTESLGKALQGLAVSEEERARFPAEA
TTLHRLLGAQPDTQRLRYHAGNLLHLDVLVVDEASMVDLSMMAKLISALPQHARVVFLGD
RDQLASVEAGAVLGDICRCSETGFSPSRAAQLTALTGCTLTGDDVEAAPAVRDSICLLRQ
SYRFDEKSGIGQLARAVNQGDARQMSAIFAAGHQDVSFQPLNDGDAYQAMLDEVARGYSD
YLHAVQHQATPEQVIDAFSRYQLLCALREGPFGVHGLNQRIEQRLMQLQRIRRPALGSRW
YAGRPVMITRNDSALGLFNGDIGITLRDEEGQLRVFFPLPDGSVKAIQPSRLPSHETAWV
MTVHKSQGSEFDHTALVMPTQFLPVLTRELVYTAITRARSQLTLYSDRAIFDRAVQLQTQ
RRSGLVERLGAAGQA
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatataaacgccttactgctccaggcagtcgaaaagcgtttactgcgtcctctg
gatatacagtttgcccgcttgattgcggatgacgcccagccttttctgctgctggcagcg
gcctgcgtcagtgccgatgccggagaaggtcacgtctgtctgccgctggctaatctgagc
gaggccggactctttgcggggcgtcagccggccctggcccaggcactgtggcaggccgca
ggcgcgccggacgatgtgcatgctgcactggcgggctggtcagcaatcagtgatggcagt
gccgtcaccccgctggtgctgagccatgagcgtttgtatctgcatcgcttgtggcagagc
gaagggcaggttgcgcgctttttttcgttgcagcccgacgaaggaacatttgatgcgcac
cgggccagcgaggtactgaccagcctgtttggcagccgtccagacgactggcaaaagatt
gccgcagccgtggcgctgacgcgaaaaaccgccgtgatttcaggtgggccgggaaccggt
aaaaccaccacggtggcaaagctgctggctgcgctaatccgattgaatacggtgccgctg
cgcatacagctggcggcgcccacgggcaaagccgcggcccgtttaacggagtcgctgggt
aaagctctgcagggactggccgtgagcgaggaagagcgcgcccggttccctgcggaagcg
acgacgctgcaccgcctgctgggtgcacaaccggacacgcagcgtctgcgctatcacgcg
ggcaatctgttgcatctggatgtgctggtggtcgatgaggcctcaatggtcgacctgagc
atgatggcaaaactgatctctgccttgccacagcatgcgcgcgtggtctttctgggcgat
cgcgatcagctggcttcggtggaggcgggcgccgtgctgggggatatttgccgctgcagc
gaaacaggatttagcccgtcacgggctgcacagctgacggccctgaccggctgcacgctc
acaggcgacgatgttgaggccgcgccagccgttcgcgacagcatttgcctgctgcgacag
agctatcgttttgatgaaaagtccggaataggtcagctggcacgggcggtgaaccagggc
gatgcgcgccagatgagcgcgatttttgccgccggacaccaggatgtttcttttcagccg
ctgaacgacggcgacgcttatcaggctatgctggacgaggtagcgcggggttatagcgac
tatctgcatgccgttcagcatcaggctacgccagagcaggtcattgacgcattcagccgt
tatcagctgttgtgtgccctgcgtgaagggccctttggcgtgcacgggctgaatcagcgc
attgagcaacgcctgatgcagctgcagcgcatcagacgtcctgcgttgggcagccgctgg
tatgcgggaaggccggtaatgatcacccgtaatgacagcgcactggggctgtttaacggc
gatatcggtattactctgcgcgatgaggaaggccagctcagagtcttttttccgttgcca
gacggcagcgtgaaagcgattcagcccagccgtttgccgtctcatgaaaccgcctgggtt
atgacggtacacaagtcgcagggatcggagtttgaccataccgcgctggtcatgccgacc
cagtttctgccggtgctgacccgcgagctggtttataccgcaattacgcgtgcgcgcagt
caactgacgctttacagcgatcgtgcaatatttgaccgcgccgtacagctgcaaacgcag
cggcgaagcgggctggtggaaaggttaggggcggccgggcaggcgtaa
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