Periplaneta americana (American cockroach): 138692781
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Entry
138692781 CDS
T10946
Symbol
Rat1
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pame Periplaneta americana (American cockroach)
Pathway
pame03008
Ribosome biogenesis in eukaryotes
pame03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pame00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
138692781 (Rat1)
09123 Folding, sorting and degradation
03018 RNA degradation
138692781 (Rat1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pame03021
]
138692781 (Rat1)
03019 Messenger RNA biogenesis [BR:
pame03019
]
138692781 (Rat1)
03009 Ribosome biogenesis [BR:
pame03009
]
138692781 (Rat1)
03016 Transfer RNA biogenesis [BR:
pame03016
]
138692781 (Rat1)
Transcription machinery [BR:
pame03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138692781 (Rat1)
Messenger RNA biogenesis [BR:
pame03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
138692781 (Rat1)
Ribosome biogenesis [BR:
pame03009
]
Eukaryotic type
Pre-60S particles
RNases
138692781 (Rat1)
Transfer RNA biogenesis [BR:
pame03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
138692781 (Rat1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
138692781
NCBI-ProteinID:
XP_069672088
LinkDB
All DBs
Position
17:84224226..84441792
Genome browser
AA seq
976 aa
AA seq
DB search
MGVPAFFRWLSRKYTSVIVPCVEEKPKEVNGVKIPVDSTKPNPNGVEFDNLYLDMNGIIH
PCTHPEDKPAPKDEDEMMIAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKETVEKIQEISRIRSELAAKGCHLPPEKPKESHFDSNCITPGTPFMARLSACLHYYVH
DRMNNDPAWKGIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHCLCGADADLIML
GLATHEPNFTIIREEFKPNKPKPCDICGQMGHEMKDCIGIERELCGANDEVQPAFSAEVE
FIFVRLNILREYLERELEMPNLPFKYDFERAVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNLYKKTVYKTGGFLTDSGNVNLDRVQLIMADLGDVEDEIFKKRQQNEIAFKEREKA
KKRRTKMLNQWQPAWVPKGQFSPQPLGQKVNPVQNPRQEAYLMRKEGMHHSSRVEQQLMG
NNPSQALSSMLRPENEGRGEKRKSDQMDKDSDEEEETHDEVRLWEDGFKDRYYESKFDVA
PDNIEFRHRVAFQYVRGLCWVLRYYYQGCASWKWYFPYHYAPFASDFINIAELSTEFERG
TKPFRPLEQLMGVFPAASSSHVPAPWATLMSDPNSPIIDFYPEDFKIDLNGKKFAWQGVA
LLPFVEEKRLFKALEPYYDSLTIPEKKRNVRGDDRLYVTVKNTSFNFIKGLYENKIGWND
EVTVSIDGMQGTVLLAEDCVVQGGSLHSPVLGLSLLTANAVFCVRFRDPKYDESFIFPAR
RLKGAREPPRVLKPQDLSPAQNRSWRPQIGMAPATQRASLGEAGHRMIGHHTNIRAGQGI
YSSVPPMINQGLQALTQLAGFLQQQFPQQQQQQHNSSWGSNYRGSGGGGGSGGGYSSGQH
QRYNTWQDSSYPYNSGYNSGGSSYKQQQGRSLSYSPYQNEQHSDRHGGGHSRRGWNGGSS
SGGGGGGGGGGYHSRR
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccagcattttttcgttggcttagcagaaagtacacatctgtaattgttcct
tgtgttgaagagaagccaaaagaagtaaatggtgtaaaaatacctgtagactcaaccaaa
ccaaatccaaatggagtggaattcgataacttatacttggatatgaatggaattattcat
ccatgcacacaccctgaagataaacctgcacccaaagatgaagacgagatgatgatagca
atatttgagtgtattgacagacttttcagaattgtgagacctcgaaaattgctgtacatg
gctatcgatggtgttgcacctcgggcaaagatgaaccagcaacgttcccgccgatttcga
gcatctaaggagacagttgaaaaaattcaagagatttcaagaattcgttcagaattggca
gcaaagggatgtcatttgccaccagaaaaaccaaaagaaagccactttgacagcaattgt
attactcctggaacccctttcatggctcggctgtctgcttgtttgcattattatgttcat
gatcgaatgaacaatgatccagcatggaaaggaataaaagtgatcttgtcagatgctaat
gtgcctggagaaggagaacacaagatcatggactatattcgaaggcagagagcacaacct
gaccatgatccaaacactcagcattgcctttgtggtgcagacgctgatttgatcatgtta
ggacttgcaacacatgaacccaattttaccattattcgagaagaattcaaaccaaacaaa
ccaaaaccatgtgacatatgtgggcaaatgggtcatgaaatgaaagactgcattggaatt
gaaagggagttgtgtggtgcaaatgacgaagtgcaacctgctttttctgctgaagtagag
ttcatatttgtccgtctgaatattcttcgggagtacctagagagagaactggagatgccc
aatctcccatttaaatatgatttcgaacgggctgtagatgactgggttttcatgtgtttc
tttgttggaaacgattttctgcctcatcttccatccttagaaatcagagaaggggccatt
gatagacttgtaaatctgtacaagaaaactgtgtataaaactgggggtttcttgactgac
agtggcaatgtgaaccttgatcgtgtccagctaatcatggcagacttaggtgatgtggaa
gatgaaattttcaagaagagacaacagaatgaaattgcattcaaggaaagggagaaagcc
aaaaagagacgcacaaagatgttaaatcagtggcaaccagcctgggtaccaaagggacag
ttttctccccaacctttaggccagaaagtaaatcctgtgcaaaatccaaggcaagaggca
tatctcatgcggaaggaaggaatgcatcatagcagtcgagtggagcaacaactgatgggg
aacaatcctagtcaagccttaagctcaatgctgagaccagagaatgagggacgtggagag
aaaagaaagtcagaccagatggataaagattctgatgaagaagaagagactcatgacgaa
gttcgattatgggaagatggcttcaaagacagatactacgaatctaagtttgatgttgct
ccagacaacattgaatttagacacagagttgcatttcagtatgttcgaggcctctgttgg
gtgctgagatactattaccagggttgtgcctcatggaagtggtactttccataccattat
gctccctttgcatcagattttattaatattgctgagttgtcgacagagtttgagagagga
acaaaaccattccgtccattggaacaacttatgggtgtgtttccagctgctagcagctca
catgttccagcaccatgggcaactctcatgagtgatccaaactctcctatcattgatttt
tatccggaggattttaaaatagatctgaatggaaagaagtttgcatggcaaggcgtagcc
cttttaccctttgttgaagagaagagactgttcaaggcattagagccttactacgactcc
ttgacaataccagaaaagaaacgcaatgtacgaggagatgacaggctgtatgtaacagtg
aagaataccagtttcaacttcataaagggcttgtatgagaacaaaataggttggaatgat
gaagtgaccgtcagcatcgatggaatgcaaggcactgttcttctggctgaagactgtgtc
gtccagggagggtcccttcattctccagtgttaggcctctcactactgacagctaatgca
gtattctgtgtcagattccgagacccaaagtatgatgagtcatttatcttccctgcacgc
cgcctgaaaggagccagggaaccaccgagagttttgaaacctcaggacttaagtcctgct
cagaacagatcatggaggcctcagattgggatggcaccagcaacccagagggcttcacta
ggagaagccggccacagaatgattggacatcatacaaacatcagagctggacagggaata
tacagcagtgttcctcccatgattaaccaaggacttcaggcattaacacagcttgctggt
ttcctccaacagcagttcccacaacagcaacagcagcaacataattcatcatggggaagc
aattacaggggaagcggtggtggcggcggcagcggcggcgggtacagtagcggtcagcac
cagaggtacaacacttggcaggattcaagttacccttataactccggttacaactccggc
gggtcatcgtacaaacaacaacaaggccgctcactcagctacagtccataccagaatgaa
caacacagcgacaggcatggtggaggtcatagcagaagaggatggaacggtggtagcagt
agcggtggcggtggaggaggtggaggtggaggttatcacagtcgtcgctaa
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