Periplaneta americana (American cockroach): 138698085
Help
Entry
138698085 CDS
T10946
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pame Periplaneta americana (American cockroach)
Pathway
pame03013
Nucleocytoplasmic transport
pame03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pame00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
138698085 (Upf1)
03015 mRNA surveillance pathway
138698085 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pame03019
]
138698085 (Upf1)
Enzymes [BR:
pame01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
138698085 (Upf1)
5.6.2.5 RNA 5'-3' helicase
138698085 (Upf1)
Messenger RNA biogenesis [BR:
pame03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
138698085 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
138698085 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
UvrD-helicase
SLFN-g3_helicase
NPHP3_N
DEAD
NAT10_TcmA_helicase
AAA_16
ATPase
nSTAND3
SRP54
nSTAND_NTPase5
AAA_22
Motif
Other DBs
NCBI-GeneID:
138698085
NCBI-ProteinID:
XP_069679888
LinkDB
All DBs
Position
4:99268447..99349869
Genome browser
AA seq
1124 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSQSQTQASQLDAGQSQITQ
SQVNGEVGENGIDVDITATTKALGELQFEEEEDEAYYNKDLPEYACKYCGIHDPSCVVMC
NVCKKWFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYSCGVRNVFVLGFI
PAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIADRCFLTWLVKIPSEQEQLRARQI
SAMQINKLEELWKDNADATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYD
KKLKESQTQENIEVRWDVGLNKKTIAYFTLAKTDGDMKLMHGDELRLRYLGELHKPWSGV
GHVIKIPDNFGEEVGIELKNNSGAPTDCISHFVVDFIWKSTSFDRMQLALRKFAVDDSSV
SGYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGTG
KTVTSATIVYHLVKQSGGSVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSREAIESPVS
FLALHNQIRNMDCNTELQKLQQLKDETGELSSVDEKRYRMLKKAAEKELLEAADVICCTC
VGAGDPRLQRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAR
AGLSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSNFFYEGSLQNGVCAEERKLTKIEF
PWPQQEKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKLTTRFLRCGVKPEQIGVITPYE
GQRAYLVQYMQYQGSLHAKLYQEIEVASVDAFQGREKDLIIMSCVRSNEHQGIGFLNDPR
RLNVALTRSKYGIIIVGNPKVLSKQPLWNHLLNFYKEQKVLVEGPLNNLKESLIQFSKPK
KLVNAANPGTHFMSTSVYDAREALVPGSVYDRTGHMNGTTAPSHFFPRPNGGGVAMDLYA
RTHDPISYISPERAQAALSNLPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRAATRN
KVKNSRNVTAKNNLTSAQGSQDATQPYSPLTQGMSQSMSQPGFSLSQPGLSQPELSQDSY
MVGEYQSQMDGLLSQDSTYQGDRSNYFTNPAQTGQFSQDSLYRS
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtagatgcttatggaccaagctctcaaacgctaacgtttttggatacggaagaa
gcagatttgattggtgcggatactcaaggatccgagtttgatttcacagattttacatta
ccgtcacaaagccagacacaagcttcacaattggatgctggacaaagtcaaatcacacaa
agtcaggtgaatggcgaggttggtgaaaatggcattgatgttgatataactgcaacaaca
aaagcattaggggaactacaatttgaagaagaagaggatgaagcgtattacaacaaggat
ttaccagagtatgcttgtaaatattgtggcattcatgatccaagttgtgtggttatgtgc
aatgtgtgtaagaagtggttttgcaatgggagaggaaatacatctggttctcatattatc
aaccatctcgtgagagccaagcacaaggaagtgactttacataaagatggtccactgggc
gagactgttttggaatgttactcatgtggtgtgaggaatgtatttgtgttgggttttatt
cctgccaaagcagattcagttgtggtattgctatgccgtcagccttgtgctgcacaaagt
tctttgaaggatatgaattgggatcaagagcaatggaagcctcttattgctgaccgttgc
tttcttacttggttagtaaaaattccatctgagcaggaacagctgcgtgcaagacagata
tcagcaatgcagatcaataagctggaagaactttggaaggataatgctgatgctaccttt
caagatttagagaaaccgggtgttgatgaggaaccacaacaagtattgctcagatatgaa
gatggctatcagtatcaaaatatatttggaccattagtgaagttggaagctgactatgac
aagaagctgaaagaatcacagactcaagaaaatatcgaggttcgctgggatgttggcctt
aataagaaaacaattgcgtactttactcttgcaaaaacagatggagatatgaaattgatg
catggagatgaactacgtctgcgctatctcggagagctgcacaagccatggtcaggagtt
ggtcatgtgatcaaaatccctgataattttggagaagaagttggtatcgaactgaagaat
aatagtggggctcccactgattgcatctcacactttgttgttgacttcatctggaaatca
acttcttttgatagaatgcagttggccttaaggaagtttgctgttgatgattcgtctgta
tcaggatatatttatcatagactgcttggtcacgaagtagaggaagtcttgtttcgttgt
catttacccaaacacttctcagcaccaaatcttcctgatctgaaccgttctcaggtatat
gcagtaaagcatgcagtgcagagaccactttcactaattcaaggccctccaggaacaggg
aaaactgtaacgtcagctacgattgtttaccatttggtgaagcagagtggtggttctgtc
cttgtatgtgctccatcgaatatagctgttgatcagttgactgagaaaatacatcgaaca
ggactgaaagttgtgcgcctttgtgcaaaatcccgtgaagccatagaatcccctgtttca
tttcttgctcttcataatcagatacgcaatatggattgcaatactgaactccagaaattg
cagcagctgaaagatgagacgggtgaactttcttctgtggatgaaaaacgatatcgtatg
ctaaagaaagctgcagaaaaagaacttctggaagctgctgatgtaatatgttgtacttgt
gttggtgctggagatcctcgtctgcagcgtttgaaattccattcaattcttattgatgag
agcatgcaagctactgaaccggaatgtatggttcctgttgttttgggtgccaagcagttg
attctggtaggtgatcactgtcaactggggccagtggtaatgtgcaagaaggctgctcgt
gctggcttgtcacagtcactgtttgagagattggttgttttgggaattcgtccatttcga
ttggaagtacagtatcgaatgcatcctgaattgtctcgcttcccttcaaactttttctat
gaaggctctctccagaatggtgtttgtgcagaggagcgtaaactcaccaagatagaattc
ccatggccacagcaggagaagccaatgttcttttatgtgacacaaggacaagaggaaatt
gcaggctcaggaacatcttaccttaacagaactgaggcctcaaatgtggagaaattaaca
acacgtttcctgcgctgtggagttaagcctgaacaaattggtgtcatcactccttatgaa
ggccaaagagcatacttggtgcagtacatgcagtatcaaggctccctccatgccaaactc
tatcaggagatcgaggtagcaagtgttgatgctttccaaggacgagagaaagatcttatt
ataatgtcatgtgtccgttcaaatgaacatcagggaataggatttctcaacgatccacgc
cgtttaaatgtagcattaacacgttcaaaatatggcattataattgttggaaacccaaaa
gtgctatctaagcaacctctttggaatcatttgctgaacttctacaaagaacagaaagtt
cttgtagaaggaccattaaacaacttgaaagaatctttgattcaattttcgaagccaaag
aagcttgtaaatgcagctaatcctggaacgcacttcatgtccacatctgtttatgatgct
cgggaagctttggttccaggtagtgtgtacgaccgaacaggccatatgaatggcactact
gctccctctcacttcttcccgagaccaaatggtggaggtgttgcaatggatttgtatgca
aggacccatgatccaattagttacatctcaccagagagagcacaggcagcattatcgaat
cttcctgtacctgtaggaatgttcatgaatatggcacatgttccacctcgcttttacaat
cagcatcagcaggcacttcaagctcgacaaaatcagagaaatcgtgcagcaactcgcaat
aaggtgaagaacagccgcaatgttacagctaagaataaccttacttctgcacaaggaagt
caagatgctacacaaccatacagtccactcacacagggaatgtcccagagtatgtcacag
cctgggttcagtttatctcagcctggcctttcccagccagaactgtctcaggatagctat
atggtgggtgaataccaatcacagatggatggacttctctcacaagactctacatatcag
ggagatcgctctaattattttacaaacccggcacagacggggcagttctcacaggactcc
ctctacaggagctaa
DBGET
integrated database retrieval system
