Periplaneta americana (American cockroach): 138702111
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Entry
138702111 CDS
T10946
Name
(RefSeq) collagen alpha-1(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pame Periplaneta americana (American cockroach)
Pathway
pame04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pame00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
138702111
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pame00536
]
138702111
Glycosaminoglycan binding proteins [BR:
pame00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138702111
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
ConA_2nd_BAM2
Motif
Other DBs
NCBI-GeneID:
138702111
NCBI-ProteinID:
XP_069685793
LinkDB
All DBs
Position
6:complement(182904297..183114794)
Genome browser
AA seq
1692 aa
AA seq
DB search
MRLRTCETTGWLVLFLWSVVGLSSSELDLSEGLVDLLQATRIHNLPLGVNRTAGMCASRP
DGGADVAYSISERTILTVQTAQLFPLGYPVDFSLLLVVSPTRGAKTAAFFTIYSDTGDEQ
IAVSLGNDVTLFYEDPDTKPPARKTISFGADISDGKWHRLGFSVKGDAVTLILDCKKQIT
KELMRTSSSRLSTTGIVLIGQQLLDDVLYTGDVQLLKIAPTPDAAYEICTTYAPDCDSVI
GAVASGDTRDEEDEGDEDDEDEEEGEGEEDVEEDPDGVKGTADPLVVTHVYQNNVSYAEG
SGDEYPVSPGSDVRYHYVTVRGPPGPRGYTGPPGAPGPPGLKGQMGRDGIVGTNGIPGPP
GHVFMIPLNAQGNEKGPDQQAETFRQMLSQHMMAMRGSEGPMGLTGIPGPEGPPGPEGMK
GEPGDIGEPGPRGLRGMMGLPGREGRRGRPGRDGERGVTGPPGAKGEQGIQGLPGMPGEK
GDRGLTGSPGEQGLPGHDGMQGEEGPPGLPGLPGELGPRGFPGPRGFPGLPGPPGIPGSE
GPVGAKGNNGPPGQPGQPGQAGPVGPVGPPGPQGQLGPPGLAGPQGKPGIPGLPGADGAP
GHPGNPGLPGAKGDIGSPGPQGPIGFPGSRGVKGDEGKRGSAGDKGDKGDRGVDGEKGDI
GMKGERGPGGPSGIPGLEGPEGPKGFEGPRGESGPPGPTGEKGKLGIPGFAGYPGPPGEK
GDKGSEGKNGQPGEKGDRGNPGLQGERGEAGPRGFRGSRGRRGLEGIPGPKGDTGQPGPP
GPQGETGPQGPEGPRGFAGPQGPPGNNGKDGVQGPPGERGPPGEPGPIGPAGAPGVVGPP
GPTGEPGPVGEPGTPGQPGHPGEPGHPGESGKEGQPGPAGPQGKPGPPGGPGLPGFPGER
GHPGLPGMPGLKGDMGPIGAPGPHGDKGQQGELGKEGPPGPEGRKGPQGPPGPSGAKGER
GEAGLPGGTGRDGLPGQRGLPGPPGPMGSPGEDGDKGDPGPPGEKGFKGSRGETGPAGPP
GPQGLRGEPGALGPPGEKGPPGEIGRQGTKGEDGPAGVPGPAGPAGPQGLPGPPGMKGEV
GDVGARGPEGPAGSPGESGPRGSKGGEGIPGPPGPEGLQGPKGEPGNPGPPGPTGIDGKH
GERGPPGPKGEEGKAGIQGPPGPRGSVGPEGPKGSPGPPGFPGTAGEPGLVGPKGERGKD
GADGRPGDAGPPGEAGPAGKMGPVGPPGKVGPEGPAGQQGSTGTPGEKGDKGPPGPPGLQ
GPLGPQGVPGPQGTPGLRGSPGPAGDVGPPGKAGGEGLPGKAGDAGPKGPKGDRGRRGPK
GHRGDMGIAGHKGEMGEKGERGMKGPTGPEGHKGEPGPTGPQGQKGSDGPPGLPGLEGPP
GPKGSEGVAGIKGEQGPAGPPGPPGPPGEAPLLPPELLFQRDTERKKRAAPTATSTTDDD
QTDDVSKDANKKNKSKKGDAKEDLGGKFLDMYSSIYTMRQDLDRIRKPVGTREHPVRTCK
DLFYGHPQFKDGWYWIDPNLGMSDDAVFVYCNMTGSGETCVFPDMHSSHMPNIPWRKEGD
KNDWYSNLRGGFRITYETIGVVQMTFLRLLSQEAYQNFTYTCINSAAWFNLKTNNHDMAI
KLLGENEVEFSTEGIRPSVLSDGCKTRKSKTETVFEVRTKKLGHLPIVDFYPVDYGLPHQ
AFGFEVGPVCFK
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgcgactcaggacttgcgagacgacgggatggctcgtcctcttcctctggtctgtcgtc
ggactgtcgtcgtcggaactggatctgtcagaagggttggtggacctgctgcaagcgacg
cgcatccacaacctgccgctgggggtcaacaggacggcggggatgtgcgcgtcgcggccg
gacggcggcgccgacgtagcctacagcatcagcgagcgcaccatcctcaccgtccagacg
gcgcagctcttccccctgggctaccccgtggacttctccctcctgctcgtcgttagtccc
acgagaggtgcgaagacggccgccttcttcactatctacagcgacaccggggacgagcag
atcgcagtgtcgctcgggaatgacgtcacgctgttctacgaagaccccgacaccaaaccc
cccgcgaggaagaccatcagcttcggggccgacatcagcgacggcaaatggcaccggctg
gggttcagcgtgaaaggagacgctgtcacgttgattctggactgcaagaaacagataacc
aaggagctcatgaggacgtcctcatccagactcagcaccacaggcatcgttctgataggc
cagcagctcctggatgacgtcctctacacgggggacgtgcagctgctcaagatcgccccc
acacccgatgccgcgtacgagatctgcaccacttacgctcctgactgtgacagcgtcatc
ggagctgtggcatcgggcgacacgcgggacgaagaagacgaaggcgacgaggacgacgaa
gacgaggaagagggggagggcgaggaggacgtcgaagaagacccggacggcgtcaaaggc
accgcggatcctctggtggtcacgcatgtgtaccagaacaacgtgtcctacgctgaaggc
tcgggagacgagtacccagtgagtcctgggagtgacgtcaggtaccactacgtcaccgtg
agggggcctcccggacccagaggctacacgggtcctccaggagcgccgggtcctcctggt
ctcaagggccagatgggcagggacggcatcgtcggaaccaatggcatcccgggacctcca
ggtcacgtgttcatgattccgctgaacgcgcaagggaacgagaagggaccggaccaacaa
gcggagacgttcaggcagatgctgtcccagcacatgatggcgatgcgaggtagtgaagga
ccgatggggctgactggaattccaggacctgaaggccctcccggtcctgaaggaatgaag
ggagaaccaggagacatcggcgagccgggtcctcgtggcttgagaggaatgatggggctt
ccaggacgagaaggaagaagaggtcgtcctggaagggatggagagagaggagtcactgga
ccaccaggagccaaaggagaacagggcattcagggacttccaggcatgccaggagaaaag
ggcgaccgagggcttacggggagtccgggggaacagggacttccaggccacgatgggatg
cagggcgaggagggacccccagggctgccaggtcttccaggagagttgggtcctcgtggt
tttcccggcccccgaggttttcctggtttgccaggtccaccaggaattccaggcagtgag
ggtcctgtaggagcgaagggtaacaacggaccacccggccagcctggacaaccaggacaa
gctggtccagtgggtcctgtagggccacccggacctcaaggccagcttggaccgccaggg
ctagcgggtccccaaggaaagccgggaattccaggcctgcccggagctgacggagcacca
ggacaccctggaaatcctggactgccaggagctaaaggggacatcggctctccgggacct
caagggcccataggattccccggctcgcggggagtgaagggggacgaggggaagcgagga
agtgctggtgacaagggggataagggcgacaggggcgtggacggcgagaagggcgacatc
gggatgaagggcgagcgagggcccggcggaccgtccgggattccgggcctggagggccca
gaaggacctaagggttttgaaggtcctcgaggagaaagtggaccaccaggaccgacaggc
gaaaagggaaaattaggaattccgggatttgctggatatcctggtcctcccggggaaaaa
ggcgacaagggctccgaaggcaagaacggccagccaggagagaagggagatcgtggcaac
ccaggacttcagggagagcgcggagaagcagggccgaggggatttcgaggttcgagaggt
agaagagggctcgaaggaattcctgggccgaagggagatactggtcaaccgggaccacct
ggacctcaaggagaaactggaccacagggtcctgaaggaccccgaggatttgcagggcca
caaggacctcctggaaacaatggaaaggatggagtacaaggaccgcctggcgagaggggc
cctccgggagagccgggtcccataggacctgctggggcacctggagttgtcggaccgccg
ggccctacaggagaaccggggcctgtgggcgagccaggtacccctggacaacccggtcac
ccaggagagccgggacacccgggggaatcggggaaagagggacagccagggccggctggg
ccacaaggaaagcctggccctccgggtggacccggactacctggatttcccggagagagg
gggcatccggggctgccgggcatgccgggtctgaaaggcgatatgggtccaattggggcg
ccaggacctcacggagataaaggacagcaaggagaacttggaaaggaaggacctcctggg
ccagagggtaggaaaggacctcaaggacctcccggtccatctggtgcaaaaggcgagagg
ggtgaggccgggcttccaggcggaactggacgagacggacttccggggcaacgagggctt
ccaggacctccgggccccatgggatctccaggagaggatggcgacaaaggcgacccggga
cctccaggagagaaaggattcaagggctctcgaggcgaaacgggacctgcagggccgccg
ggaccccagggtcttcgaggagagcccggtgcgctaggacctcccggagagaagggtcct
cctggagagataggaagacaagggacgaaaggagaggacggccccgccggagtaccaggt
ccagccggtccagcagggccccagggactgccgggaccaccagggatgaaaggagaggtc
ggcgacgtgggggcgagaggtcctgaaggccccgccggttcaccaggtgaatcgggtcct
cgtgggagtaaaggaggagaaggcatccccggtccacctggtccagagggtctgcagggt
ccaaaaggagagcctggaaacccagggccgccaggacccactggcatagatgggaagcat
ggtgaacgaggtcctccgggcccgaaaggagaagaaggtaaagccggtatccaaggacct
ccaggtccgagaggatccgtgggccccgaaggaccaaagggtagtcccggacctcctgga
ttcccagggacggcaggagagcctggcttggtcggacccaaaggagaacgaggaaaagat
ggggcggacggccgcccaggagacgcagggcccccgggtgaagccgggcccgcgggcaag
atggggcccgtcggaccgccaggcaaagtgggtcctgagggtcctgcaggacaacagggt
agcactggcacacctggagagaagggagacaaaggaccaccagggcctccaggactgcaa
ggtccgttaggtcctcaaggagttcctggaccgcaggggacgcctggactcaggggctcg
cctggcccagcgggagatgtggggccgcccggtaaagccggaggtgaaggtcttcctggg
aaggcaggagatgctggtccgaaaggtcccaaaggagatcggggtcgaagagggcccaaa
gggcaccgcggtgacatggggatagcgggtcataaaggggaaatgggcgaaaaaggcgag
cgcggcatgaaggggcctaccggacctgagggacataaaggagagcctgggccgacagga
cctcagggtcagaagggcagtgacggcccgcctggactgcctggtttggaaggacctcca
gggccgaagggctcggagggcgtggcggggatcaagggtgaacaaggaccagcaggtccg
ccggggccgcccggccccccaggggaggcgcccctgctccctccagagctgctgttccag
agggacaccgagcggaagaagagggccgccccaaccgccacctcgaccaccgacgatgac
caaacggatgatgtatctaaagatgcaaacaagaagaacaaatctaagaaaggagatgcc
aaagaggatctcggtggcaaattcctagacatgtacagctcaatttatacaatgcggcag
gaccttgacagaataaggaaacctgttggcacaagagagcatcccgtaaggacctgtaag
gacctattctacgggcatccgcaatttaaagacggctggtattggatcgaccccaacttg
ggcatgtcggacgacgctgtgttcgtgtactgcaacatgacgggcagcggggagacgtgc
gtgttcccggacatgcactccagccacatgcccaacatcccctggaggaaggagggcgac
aagaacgactggtactccaacctgaggggcggcttcaggataacctacgaaacgataggc
gtggtacaaatgacgttcctaaggctactaagtcaagaggcgtaccagaacttcacttac
acctgcatcaactcagctgcctggttcaacctgaagacgaacaaccatgacatggcaatc
aagctgttgggggagaatgaagtcgagttcagcacagaaggaatcagaccaagtgtgttg
tctgatgggtgtaaaacacggaagagcaaaactgaaacagtttttgaggttcgtacaaag
aagctcggccatctacctatagtagatttctaccctgtagactatggattaccacatcag
gcgtttggcttcgaggtcggaccagtgtgtttcaagtga
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integrated database retrieval system
