Periplaneta americana (American cockroach): 138710493
Help
Entry
138710493 CDS
T10946
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
pame Periplaneta americana (American cockroach)
Brite
KEGG Orthology (KO) [BR:
pame00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pame04147
]
138710493
00535 Proteoglycans [BR:
pame00535
]
138710493
00536 Glycosaminoglycan binding proteins [BR:
pame00536
]
138710493
Exosome [BR:
pame04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
138710493
Proteoglycans [BR:
pame00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
138710493
Glycosaminoglycan binding proteins [BR:
pame00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138710493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
138710493
NCBI-ProteinID:
XP_069697523
LinkDB
All DBs
Position
12:complement(60979223..61843962)
Genome browser
AA seq
1053 aa
AA seq
DB search
MPVRGAVCPTLSGLLCSYLVLFALKGALQELKLYGTPSLAEVHCDNAFEGFGSGESTSEY
DLDGDVDQEEGGEDTILSSGEGSGRGETGGLLPPFPPPPPGPDDFPSRGLKGDKGERGPR
GPPGESIRGPPGPPGPPGPPGPPFSGGAGIGEYSPGAAVGEDLPFGGGGLMGPPGPPGVC
SCNLTTFLSSLTLPDAIPGPPGLPGIDGKAGPPGTSGLPGPPGERGPPGPRGDKGDRGDS
GSPGPEGIQGSKGEPGRDGLPGMPGSPGPPGPPGKSEFSNYDDPTLNDASVGFTPKVRSA
GMLESLKPNWKPRTMFKESILGSGFGSSLGRPGSPGQKGEPGISGTPGAPGERGVPGSKG
ERGDAGLKGSKGDRGHQGPQGAQGFKGEPGSPGIDGLPGFPGGNGRDGSKGQKGEAGESG
KPGAPGPPGPPALSIYHPEEGDFSGSGIGTAAAGLKGDKGDLGPSGEKGDTGPKGEKGDR
GGSGLPGIPGANGIQGSAGEKGEPGELGTAGPPGPPGMKGERGERGPPGPATIAGMDGEY
ITIKGEKGDHGKRGRRGKPGPPGPQGPPGKPGTIGEMGMPGWRGLPGQPGTPGLPGFKGE
KGDPGELPFGITFKGERGEKGDRGSPGIGLVGPPGPPGPPGPATSGDGDGSTKYIPVPGP
PGPPGNPGPPGPPGVSLIGQKGEPGAPGPGMGRGVIFGDPSMTAPPSGFSRPGSVRGSLE
ELKALKELQQLKDRKETLGSPGPSTRPFPTDSGPTRIVPGAVTFQNTEAMTKMSSVSPVG
TLAYIIDEEALLVRVNNGWQYIALGSLLPITTQPPPTTTPQSVKPPFEASNLINNKPAPV
EGPSWYPRMLRMAALNEPYTGDMTGVRGADYSCYRESRRAGLRGTFRAFLSSRVQNLDSI
VRYTDRELPVVNIKGEVLFNSWKDMFNGDGGFFSQQPRIYSFSGKNILTDFAWPQKIVWH
GSHLLGERAMDTYCDAWHSASTDKVGLASSLLKNKLLDQERFSCNNRFAVLCIEATSQYS
RRRRRRETQDDKEFSEGDYQAHLETLMSDKGEK
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgccggttcgaggggcagtttgccccaccctctctggattactctgttcttacctagtc
ctgtttgcattgaagggggcgctgcaagagctgaagctgtatggaacgccatccctcgca
gaggtccactgtgacaacgcattcgagggatttggctccggagagagtacttcagaatat
gatctcgacggtgatgtggaccaggaggaaggtggagaagacacaattttatccagtggc
gaaggaagtggacgaggggaaaccggaggtttgttgcctccttttcccccacctccccca
ggtcctgacgattttccatctagagggctgaagggagacaaaggagaaagaggtccacgg
ggtcccccaggagaatctatacgtggacctccaggtccgcccggtccacctggccctcct
ggaccaccattttcaggcggcgctggcattggtgaatattctccgggagctgcagtcgga
gaggaccttccttttggaggtggaggactaatgggtcccccaggacctcctggtgtatgt
tcctgtaacttaactacatttctgagttcgctgacgctgccggacgcgattccagggcct
ccaggtcttcctggtattgacggaaaagccggacctccaggcacttccggtcttcctggc
cctcccggcgaaagaggccctcctggaccaagaggagacaaaggagatagaggagattct
ggatctccaggacctgaaggcattcaggggtcgaaaggagagccaggtagagatggttta
ccagggatgccaggatcaccaggacctccagggccaccaggcaagtccgaattctccaat
tatgatgaccctacattgaatgacgctagcgttggtttcaccccaaaagttcgctcggcc
ggcatgttggaatcgttaaagccaaattggaaacctaggacgatgtttaaggaatcgatt
ttgggctctggcttcggatcatccctcgggaggccaggtagtcctggtcagaagggtgaa
cctggcatatctggaacgcctggagcaccaggagagagaggagttcctggcagtaaaggg
gaacgaggagacgctggactaaaaggttccaaaggagacaggggacatcaaggacctcaa
ggagctcaaggattcaaaggtgaacctgggtcacctggaattgatggattaccaggcttt
ccaggaggaaatggtcgtgatgggagcaagggacagaaaggtgaggcaggtgaatcaggg
aaaccaggtgcccccggacctcctggaccccctgcattgtccatatatcatccagaagaa
ggtgacttctcaggttcaggaataggaacagcggccgcgggcctcaaaggggacaaaggt
gatctaggtccttcgggggaaaaaggtgacacaggacccaaaggggagaaaggcgacaga
ggaggcagtggactaccaggcatcccaggagctaatggcattcagggatcggcaggtgag
aaaggtgaaccaggtgaactaggaacagcaggtccaccaggacctcctggtatgaaagga
gaacggggagagagaggtcctccgggacctgcaactattgctggaatggacggggaatac
atcacaatcaaaggagaaaaaggagatcatgggaagagaggaagacgtggcaaaccagga
cctccagggccacaaggtcctcctggaaaaccaggaacaataggagagatgggaatgcca
ggatggaggggcttaccaggacaaccgggtacaccaggccttcctggcttcaagggagag
aaaggcgatccaggagagctaccatttggaattacgtttaaaggggaaagaggagaaaaa
ggtgatagaggctctcctggaattggactcgttggaccaccaggtcctcctggtcctcca
ggtccagctacaagcggtgatggtgatggaagtacgaagtatattccagttcctggacct
cctggaccaccagggaatcccggtcctccaggaccaccaggtgtgtctttgataggtcag
aaaggagaaccaggtgcacctggcccaggaatgggtagaggagtaatatttggtgaccct
tcaatgactgcaccaccctcaggtttcagtcgaccaggtagtgtacgtggaagtttggaa
gaacttaaagcactcaaggaactacagcagctaaaggatagaaaggaaactttaggttca
cctggaccatctactagaccatttccaacagacagtggaccaacaagaattgttccaggt
gctgtcacatttcagaacacagaagctatgaccaaaatgtcgtcagtgagtccagttgga
actctagcttacataattgatgaagaagcacttttagttcgagtcaataatggctggcaa
tatattgccttgggatctctattacctattacgacacaacctccacctaccacaacacca
cagtctgtgaagcctccatttgaagcatcgaatttaatcaacaacaaacctgccccagtc
gagggacctagttggtatcctagaatgcttaggatggctgcactgaatgaaccctacact
ggggatatgacaggtgtaagaggagctgattactcttgttatcgagaatcccgaagagca
ggtctccgaggaacatttagagcattcctgtcttcaagagtgcagaaccttgactcgatt
gtgcgttacactgatcgagaactgccagtggtcaatattaagggtgaagtattgtttaac
tcttggaaagacatgttcaatggcgatggtggattcttctctcagcaaccaagaatatac
agtttcagcggaaaaaatatacttacagattttgcctggccacagaaaattgtatggcat
ggctcccacctactaggtgagagagccatggatacgtactgcgacgcatggcactctgct
agcacagataaggtgggccttgcctcttcattgctcaagaacaaactgttggaccaggag
cgtttctcttgcaacaacaggttcgcagtcctatgcattgaagctacgagtcagtattca
cgccgacggcgtcgtagggaaactcaagatgacaaagaattttcagaaggagactatcag
gcacacttggaaacacttatgtctgataagggagaaaagtga
DBGET
integrated database retrieval system
