Periplaneta americana (American cockroach): 138714770
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Entry
138714770 CDS
T10946
Symbol
RtcB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pame Periplaneta americana (American cockroach)
Brite
KEGG Orthology (KO) [BR:
pame00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pame03016
]
138714770 (RtcB)
Enzymes [BR:
pame01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
138714770 (RtcB)
Transfer RNA biogenesis [BR:
pame03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
138714770 (RtcB)
Prokaryotic type
tRNA splicing ligases
138714770 (RtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
138714770
NCBI-ProteinID:
XP_069702985
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All DBs
Position
15:31054299..31069843
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AA seq
506 aa
AA seq
DB search
MVVRQYNEELKYLEKINPNCWRIKKGFQPNMNVEGVFYVNNHLEKLMLDELRNSCRPGMV
GGFLPGVKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMNDPKSVVSPGGVGFD
INCGVRLLRTNLHEKDVLPVKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAASKMGIEMQGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIK
SPEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKQFHLTPDDLDMHVIYDVSHNIAKIE
EHIVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
QETFGSTCHGAGRALSRAKSRRNLDYQVVLNKLEEMGISIRVASPKLVMEEAPESYKNVT
DVVDTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtacgccaatacaatgaagagctcaaatacttggagaaaataaatcctaactgc
tggaggattaagaaggggtttcaaccaaatatgaatgttgaaggcgttttttatgttaat
aatcacctagagaaacttatgttggatgaattgagaaattcatgtcgtccgggtatggtt
ggaggcttccttccaggtgtgaagcagatagctaatgttgctgcattgccaggaattgtt
gggcgttccgtaggccttcctgatgtgcattcaggctatggatttgccattggaaatatg
gcagcatttgatatgaatgatcctaaatcagtagtgtctcctggtggggtaggatttgac
atcaattgtggagtacggctgttgaggacaaatctccatgaaaaagatgtcctaccagtt
aaagagcagttggcacagagcatgtttgatcacataccagtgggagttggatccaagggc
atcatccccatgaatgctagagatctggaagaagctcttgaaatgggcatggactggtct
ttacgagaaggatacatttgggcagaagataaggagcactgtgaggaatatggcaggatg
ttaaatgcagacccatcaaaagtgagcatgcgagccaagaaacgaggactgccacagctg
ggaacactgggagcaggaaatcactatgctgagatacaagtcgttgatgaaatctatgac
aaatgggctgctagtaagatgggtattgaaatgcaaggacagatctgtgtcatgatccat
tctggcagccgaggatttggacatcaagttgctacagatgccttagtgcagatggagaaa
gccatgaaacgtgataacattgagacaaatgaccggcaactagcctgtgcccacatcaaa
tctcccgaaggccaggactacctgaaatcaatggcagctgctgctaattttgcatgggtt
aatcgaagctctatgactttccttagcagacaggcatttgcaaaacagtttcacttaaca
ccagacgatttggacatgcatgtcatatatgatgtctcgcataatattgcaaaaattgaa
gagcatattgtggatggaaaacagaagacgctgttggtacataggaagggatctacgcgt
gcttttcccccacatcatcctttgattcctgtggactaccaattgactggacagcctgta
ctgattggtgggactatgggaacctgcagctacgttctcacaggcactgaacaaggaatg
caagaaacgtttggttctacttgccatggagctggacgtgcactttcgagggcaaagtca
agacgaaatcttgattaccaggttgtactcaacaaattggaggaaatgggaatctcaatt
cgtgttgcatcacccaaactggttatggaagaagctcctgaatcatataagaatgtaact
gacgttgtcgacacttgccatgcagctgggatcagcaagaagtgtataaagctaaggcca
atagctgttatcaagggttaa
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