KEGG   Pseudomonas amygdali: BKM19_002875
Entry
BKM19_002875      CDS       T05354                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
pamg  Pseudomonas amygdali
Pathway
pamg03030  DNA replication
pamg03410  Base excision repair
pamg03420  Nucleotide excision repair
pamg03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pamg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BKM19_002875
   03410 Base excision repair
    BKM19_002875
   03420 Nucleotide excision repair
    BKM19_002875
   03440 Homologous recombination
    BKM19_002875
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pamg03032]
    BKM19_002875
   03400 DNA repair and recombination proteins [BR:pamg03400]
    BKM19_002875
Enzymes [BR:pamg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BKM19_002875
DNA replication proteins [BR:pamg03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BKM19_002875
DNA repair and recombination proteins [BR:pamg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     BKM19_002875
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BKM19_002875
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc DNA_pol_A_exo1 DNA_polI_exo1 Obc1_cap
Other DBs
NCBI-ProteinID: AVB12663
UniProt: A0AB35QWY7
LinkDB
Position
complement(443101..445866)
AA seq 921 aa
MTQAPLVLIDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRRQYPDSPFAVVFD
AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLAR
SSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM
GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIRGAKTLAAKLEEHRAM
AFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAELEFKSWIEDLQRDAKRAGQEL
AVEEPTVEAKEAAYEVILEQSQFDAWLKKLNAAPLFAFVTQSNGTDAQRAQLVGLSFAIQ
THEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGD
QTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQ
IAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIERQGALVD
ANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKTATGQAS
TAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTG
RLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAF
RNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAY
VDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAP
MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIRPHMSGA
AELAVPLLVEVGVGNNWDEAH
NT seq 2766 nt   +upstreamnt  +downstreamnt
atgacccaagcgccgctcgtcctgatagacggttcctcttacctctatcgcgccttccac
gcactgccaccactgaccacgtccaaaggattgccgacgggcgccgtcaaaggcgtgctc
aacatgctcaaaagcctgcgtcgccagtacccggacagcccgtttgcggtggtcttcgat
gccaagggcgggactttccgcgacgcgctgtataccgattacaaagccaatcggcccagc
atgccggatgacctgcgcgtgcaggtcgatctgctgcatgcttgcgtcaagggcatgggc
tatccgctgctatgcgtggaaggcgttgaagcagacgacgtgatcggcaccctggcgcgc
agcagcgcagcagcggaccgtccggtgatcatctccaccggtgacaaggacatggcgcaa
ctggtcgacgggcacatcactctggtcaacaccatgaccggcagcgtgctggacgtggct
ggcgtgaaagagaagttcggcgtcggcccggagcacatcatcgactacctcgcactgatg
ggcgacaaggtcgacaacatacctggcgtccccggcgtcggcgaaaagactgccgtcggc
ttgctggttggcgtgggcggcggaatcaaggagctttacgaacgcctcgaaacggtcgcg
accctgcctattcgtggggccaagaccctggcggccaagcttgaagagcatcgtgcgatg
gccttcctgtcctatgaactggcaactatcaagatcgacgtgccactggacatcgaactg
gaccagctgcattgcggcgagccggaccgcgacaaattgatggagctgtacgccgagctg
gaattcaaaagctggatcgaagacctgcaacgtgatgccaaacgcgccgggcaggaactg
gccgtcgaagagccaaccgtcgaggcaaaagaagccgcctatgaagtcattctcgagcag
agccagttcgacgcgtggctgaagaaactcaacgccgcgccgctgttcgccttcgtgacc
cagagcaacggcaccgacgcccagcgcgcgcaactggtaggtttgtcttttgccattcag
acccacgaagccgcctacattccgctgacccattcctacatgggggtgccgcagcaactg
gaccgcgacacggtgctcaaggcgctcaagccgctgcttgaagacccggataaaaccaag
gtcggtcaacacgccaagttcgctatcaacctgcttgccaactgcgcgctcgacggcgat
cagacccaaggcatcgacctgcagggcgtcaggttcgacactattctggagtcctacgtt
ctggattccactgccacccgccacgaccgcgacagcctggtggcgaagtacctgacgcac
acgccgatcaacttccaggagatcgccggcaaaggcgccaagcaactgaccttcgaccag
atcgccatcgagcaggctggcaattacgcagccgaagaagccgacctgaccctgcgcctg
catgaagtcttcgaagcgcgtctggccgcaattccaaccctgcagccggtcttgaacgac
atcgagatgccgctggtgcccgtcctggcaggtatcgaacgccagggcgcactggtcgat
gccaacctgctgggcatccagagcgtcgaactgggcgacaagatgaccgcgctggagcgc
gaagccttcgccattgccggtgaagagttcaacctgggctcgcccaagcagcttggcgtg
attctctacgaaaaactcggcatgccgatcctcagcaagaccgccaccggccaggcatcg
actgccgaggccgtgctggccgaactcgccgagcaggacttcccgctgcccaaggtactg
atgcaataccgctcgatgagcaagctcaagagcacttacaccgaccgcctgccggagcag
atcaacccgcgcaccggacgcattcacacctcctatcaccaggcagtggcggtgaccggg
cgcttgtcatccagcgatccgaacctgcagaacatcccgatccgtactgctgaaggccga
cgcatccgtcaggcgttcgtggcccccaagggctacaagctgctggcggcagactattcg
cagatcgaactgcgcatcatggcgcatctggcacaggacgaaggcttgctgcatgccttc
cgcaacgacctggacgttcaccgcgcgacggcagcggaagtcttcggcgtcgagctggaa
aacgtcaccacggacatgcgccgcagcgccaaggcgatcaacttcggcctgatctacggc
atgagcgcgtttggcctggccaaacagattggcgtggaccgcaagcagtcacaggcttat
gtcgaccgttacttcgcccgctaccccggcgtgctggattacatggagcgcacacgtgct
caggccgccgagcagggttttgtcgagaccattttcggccgtcgcctgtacttgccggac
atcaacgccaagaaccagtccctgcgcaaaggtgccgaacgcatggcgatcaacgcgccg
atgcaaggcactgcggcggacatcatcaagaaagccatggtggccgtgaatggctggctg
gaagaatccggtctggatgcgcgggtcattctgcaggtgcatgacgaactggtgctggag
gtgcgcgaagacctggtcgatcagatcagtgaacagatccgcccacacatgagtggcgca
gcagaattggcagtgccgctgctggtggaagtcggggtcggcaacaactgggacgaggcg
cactga

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